Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I03
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine r...    33   0.18 
AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    28   5.0  
Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z28377-1|CAA82226.1|  264|Caenorhabditis elegans PES-1A protein ...    28   6.7  
Z28376-1|CAA82225.1|  228|Caenorhabditis elegans PES-1B protein ...    28   6.7  
Z28375-1|CAA82224.1|  264|Caenorhabditis elegans PES-1 protein.        28   6.7  
U64609-3|AAB04600.1|  264|Caenorhabditis elegans Patterned expre...    28   6.7  

>AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein92 protein.
          Length = 348

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = -3

Query: 291 GTSALLALNLSVISFVMSRSLSDINNKFSEIDSRLTRQLFDKYVSLKYLN 142
           G + L+ +NLS+I    SRS   + NKF +I S +TR L   Y SL Y++
Sbjct: 115 GINTLIFMNLSLIYLYESRSSLIVKNKF-KITSSMTRAL---YYSLNYMS 160


>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = -3

Query: 450 SSVKSEKYLSNK*NYNFLLKNETIPSVFSYDVVTFNYRQ*TDFTDNRYFFYGQGTSALLA 271
           S+  S+++LS   NY  LL NET      Y V  F + +  +FT ++YF +     A++ 
Sbjct: 152 SNGDSDRFLSE--NYPTLLGNETKIEDLYY-VGPFFWPKYNNFTTDQYFNWRTAGGAMIV 208

Query: 270 LNLSVISFVM 241
           + L  +S  +
Sbjct: 209 MGLISLSIAI 218


>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 285 SALLALNLSVISFVMSRSLSDINNKFSEIDSRLTRQ 178
           SAL AL+L+  SF  SR L +IN+   +I   +  Q
Sbjct: 290 SALSALSLAAHSFKNSRELKEINDLIKKIKDEVESQ 325


>Z28377-1|CAA82226.1|  264|Caenorhabditis elegans PES-1A protein
           protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 118 LYRYISSDFYYLLNVKCLLYYXINDHQISFKNSF 17
           +Y+YISS+F Y  N K L +     H +S    F
Sbjct: 119 IYKYISSNFSYYKNQKPLQWQNSVRHNLSLHKEF 152


>Z28376-1|CAA82225.1|  228|Caenorhabditis elegans PES-1B protein
           protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 118 LYRYISSDFYYLLNVKCLLYYXINDHQISFKNSF 17
           +Y+YISS+F Y  N K L +     H +S    F
Sbjct: 83  IYKYISSNFSYYKNQKPLQWQNSVRHNLSLHKEF 116


>Z28375-1|CAA82224.1|  264|Caenorhabditis elegans PES-1 protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 118 LYRYISSDFYYLLNVKCLLYYXINDHQISFKNSF 17
           +Y+YISS+F Y  N K L +     H +S    F
Sbjct: 119 IYKYISSNFSYYKNQKPLQWQNSVRHNLSLHKEF 152


>U64609-3|AAB04600.1|  264|Caenorhabditis elegans Patterned
           expression site protein 1 protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 118 LYRYISSDFYYLLNVKCLLYYXINDHQISFKNSF 17
           +Y+YISS+F Y  N K L +     H +S    F
Sbjct: 119 IYKYISSNFSYYKNQKPLQWQNSVRHNLSLHKEF 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,859,072
Number of Sequences: 27780
Number of extensions: 236515
Number of successful extensions: 568
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)