Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I01
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    28   0.99 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   4.0  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    26   5.3  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   5.3  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -1

Query: 276 DWSVDDVYAYLSSTDDCKPVA----ERMKREEIDGEAFVM 169
           +W V D+   ++++  CKPVA     + +RE IDG+  V+
Sbjct: 165 NWQVTDIVDKIATSYGCKPVAGMLSHQQEREVIDGKKQVI 204


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = +2

Query: 5   TIIRTRSNGAAEGDHEPQFCSKLCVYQRTMAMCLLSCSANSFFMCRKSLMTGRSXMTKAS 184
           T+I + ++ +   +      S + + + +    LLS    SF   R +  +    +T AS
Sbjct: 306 TLINSVTSSSETTNLPSSSSSLVTIGESSFPSSLLSLLTQSFSTVRSTSSSSTDQLTSAS 365

Query: 185 PSISSRFMRSATGLQSSVL 241
           P  SS    S +   SS+L
Sbjct: 366 PISSSVISPSVSSPTSSIL 384


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 286 QPAGLERGRRVRLPEQHGRLQ 224
           +P  LE    + LP++HGRLQ
Sbjct: 436 RPGRLEVHMEISLPDEHGRLQ 456


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 237 TDDCKPVAERMKREEIDGEAF-VMXDLPVIRDF 142
           T +     ER K E  D   F ++ DLPVIR+F
Sbjct: 598 TPEATSEIEREKNESKDISTFNIILDLPVIREF 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,397,071
Number of Sequences: 5004
Number of extensions: 18963
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)