Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I01
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385...    29   3.1  
05_05_0214 + 23319507-23321540                                         29   4.1  
03_04_0050 + 16847849-16847978,16848744-16848898,16849207-16849440     27   9.5  
03_03_0229 - 15612829-15612897,15612982-15613083,15613503-156135...    27   9.5  
02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762           27   9.5  

>10_08_0452 -
           18038182-18038253,18038338-18038415,18038502-18038579,
           18039112-18039168,18039276-18039349,18039424-18039495,
           18039609-18039670,18039861-18039962,18040378-18040490,
           18040809-18040940,18041156-18041243,18041617-18041711,
           18041793-18042023,18042567-18042680,18042765-18042866,
           18043091-18043207,18043301-18044146
          Length = 810

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 393 SDVSDAEEPELKKLRGARDAPRPFERDLALELK 295
           S+  D ++P   K   A DAP+  E+D  LELK
Sbjct: 143 SESQDIKKPSSPKKTKALDAPKSEEKDTTLELK 175


>05_05_0214 + 23319507-23321540
          Length = 677

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 58  VLLEVVRVPAHDGDVLAELQRELLLHVQEVSDD-GQVXHDEGLAVDLLPLHALG 216
           VLL + R  A   D  A  +  LLL   EV+    ++ HD    +DLLP+  LG
Sbjct: 89  VLLVLQRFKAVVADCSARSRMRLLLQADEVAARVRELQHDLATLLDLLPVPELG 142


>03_04_0050 + 16847849-16847978,16848744-16848898,16849207-16849440
          Length = 172

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 82  PAHDGDVLAELQRELLLHVQEVSD-DGQV 165
           P H G + + + R++ LHV+ V+D DG V
Sbjct: 40  PRHRGSITSSVLRKMFLHVRNVTDNDGFV 68


>03_03_0229 -
           15612829-15612897,15612982-15613083,15613503-15613553,
           15613637-15613706,15613816-15613984,15614217-15614326,
           15614443-15614510,15615412-15615480,15616649-15616692,
           15616803-15617050,15617620-15617633
          Length = 337

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = -1

Query: 243 SSTDDCKPVAERMKREEIDGEAFVMXDLPVIRDFLHMKKEFALQLSKHIAIVRWYTHNFE 64
           ++ DD   +A ++K +   G+      L    D L++    +  + KH+ +  W+ H  +
Sbjct: 141 NAIDDVNKMAGKVKEQTAAGQ--FATSLQTFTDLLYLIDSKSDSVVKHVQLHDWHRHGHD 198

Query: 63  QNCG 52
            N G
Sbjct: 199 ANNG 202


>02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762
          Length = 495

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 127 LLHVQEVSDDGQVXHDEGLAVDLLPLHA 210
           +LH++  S   Q+  DE ++  +LPLH+
Sbjct: 462 VLHLERASAIAQIIFDESVSPQILPLHS 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,855,063
Number of Sequences: 37544
Number of extensions: 160944
Number of successful extensions: 585
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)