Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_I01
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-1|CAB63336.1|  453|Caenorhabditis elegans Hypothetical ...    31   0.92 
Z67738-5|CAA91547.1|  484|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z67735-4|CAA91533.1|  484|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    28   6.5  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    28   6.5  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    28   6.5  

>AL032631-1|CAB63336.1|  453|Caenorhabditis elegans Hypothetical
           protein Y106G6H.1 protein.
          Length = 453

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +2

Query: 89  TMAMCLLSCSANSFFMCRKSLMTGRSXMTKASPSISSRFMRSATGLQSS 235
           ++A C+LS +A+    CR+SL  GR  +   + +++SR +     L S+
Sbjct: 9   SLATCILSVNADFHEECRQSLRDGRLRIETVAETLASREIDRLVSLMSN 57


>Z67738-5|CAA91547.1|  484|Caenorhabditis elegans Hypothetical
           protein W03G11.4 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 362 SSGSSASDTSEMRLSRDVELV----SVSLSGDARLRTARTGRGEHSPGSFS 502
           SS SS+  T   RLSRD ELV     +S S +AR  TA  GR     G ++
Sbjct: 39  SSASSSKQTEHERLSRDRELVRRHGRLSSSEEAR-NTAVMGREAREDGIYT 88


>Z67735-4|CAA91533.1|  484|Caenorhabditis elegans Hypothetical
           protein W03G11.4 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 362 SSGSSASDTSEMRLSRDVELV----SVSLSGDARLRTARTGRGEHSPGSFS 502
           SS SS+  T   RLSRD ELV     +S S +AR  TA  GR     G ++
Sbjct: 39  SSASSSKQTEHERLSRDRELVRRHGRLSSSEEAR-NTAVMGREAREDGIYT 88


>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 393 SDVSDAEEPELKKLRGARDAPRPFE 319
           SDVS  EE ELK     ++ P PFE
Sbjct: 623 SDVSSDEESELKSSAKYKETPLPFE 647


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 393 SDVSDAEEPELKKLRGARDAPRPFE 319
           SDVS  EE ELK     ++ P PFE
Sbjct: 623 SDVSSDEESELKSSAKYKETPLPFE 647


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 393 SDVSDAEEPELKKLRGARDAPRPFE 319
           SDVS  EE ELK     ++ P PFE
Sbjct: 623 SDVSSDEESELKSSAKYKETPLPFE 647


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,214,602
Number of Sequences: 27780
Number of extensions: 118659
Number of successful extensions: 476
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)