Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H24
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   107   2e-24
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    56   4e-09
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    56   4e-09
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    39   6e-04
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   1.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   4.7  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   6.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   6.3  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   8.3  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  107 bits (256), Expect = 2e-24
 Identities = 46/55 (83%), Positives = 52/55 (94%)
 Frame = -3

Query: 712 STAIQELFKRISEQFTXMFRRKAFLHWYTGEGMDEMEFTEXESNMNDLVSEYQQY 548
           ST+IQE+F+R+ +QF+ MFRRKAFLHWYTGEGMDEMEFTE ESNMNDLVSEYQQY
Sbjct: 371 STSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 21/54 (38%), Positives = 37/54 (68%)
 Frame = -3

Query: 712 STAIQELFKRISEQFTXMFRRKAFLHWYTGEGMDEMEFTEXESNMNDLVSEYQQ 551
           +T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+E   ++  L  +Y++
Sbjct: 385 TTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 21/54 (38%), Positives = 37/54 (68%)
 Frame = -3

Query: 712 STAIQELFKRISEQFTXMFRRKAFLHWYTGEGMDEMEFTEXESNMNDLVSEYQQ 551
           +T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+E   ++  L  +Y++
Sbjct: 381 TTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
 Frame = -3

Query: 709 TAIQELFKRISEQFTXMFRRKAFLHWYTGEGMDEMEFTEXESNMN---DLVSEYQ 554
           T+I  LFKR  +Q+  + +R AFL  Y  E + E +  E +S+ +   DL++EY+
Sbjct: 382 TSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 337 KLPVMTNYLNEHNLFNTFLDIPPGLVE 257
           K+    ++L EHN+FNTFL    G+V+
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 712 STAIQELFKRISEQFTXMFRRKAFLHWYTGEGMDE 608
           S+ IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 194 SSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 300 ICSIHSLIFHQASLRARSEICKG*SKIDTFYLHNMCNRNKMADQNSIPTXADSTRTPVPX 121
           + S+H +   Q+ + ARS    G   +  F  H   + +K  + +S P    +T+TP P 
Sbjct: 631 LASLHDMRKSQSPICARSATSAG---LPRFEYHT--SLSKSLEHSSTPASLQATKTPSPS 685

Query: 120 Y 118
           +
Sbjct: 686 F 686


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 159  VSNFDPPFCFCCTYYVNKK 215
            VSN  PPF  C TY ++K+
Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 370 HAX*LLTDSTTKLPVMTNYLNEHNLFNTFLD 278
           H    L+D   KL   T  +NEHN  N FLD
Sbjct: 69  HGKSTLSDCILKL---TGVINEHNFRNQFLD 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,687
Number of Sequences: 5004
Number of extensions: 42050
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)