Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H23
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...   164   1e-41
SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    47   3e-06
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    29   0.91 
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    28   1.2  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    27   3.7  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    26   4.9  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   6.4  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  

>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score =  164 bits (399), Expect = 1e-41
 Identities = 93/227 (40%), Positives = 133/227 (58%), Gaps = 2/227 (0%)
 Frame = -1

Query: 739 IIVSDGSKDSTVXVAESYSIXYG-SDXVKCLELIKNRGKGGAVRLGIQSSRGATILFADA 563
           +IV D SKD+TV     +S      D ++   L +NRGKGGAV  G+  +RG   +FADA
Sbjct: 106 LIVDDESKDTTVNAVLEFSNKLDLRDHLRVCSLKRNRGKGGAVTWGMLYARGQYAIFADA 165

Query: 562 DGASKFEDLTKLEVALKDIVKCDPLKDVKTTSESLGIVIGSRAHL-EKESLAKRNIFRNI 386
           DGAS+F DL   E+  K++                G+V+GSRAH+    ++ KR+  RN 
Sbjct: 166 DGASQFSDL---ELLFKNM----------PPGPRGGVVVGSRAHMVNTAAVVKRSFIRNF 212

Query: 385 LMYGFHFLVWLFTVKGIKDTQCGFKLFTRKAARICFESLHVNRWAFDVELLYIAQKLNIP 206
           LM+ FH L+ +  ++ I DTQCGFKLF+R+A +  F  +HV  W FD+E+L +A+   +P
Sbjct: 213 LMHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEVLTLARFFGLP 272

Query: 205 ISEIPVRWTEIEGSKVTPVVAWIQMGCDLGLIWLKYRIGAWKIKSEK 65
           I E+P+ W E+ GSK+T +   I M  DL +I L Y  G W+  S K
Sbjct: 273 IIEVPITWHEVGGSKMTLLKDSISMAIDLLVIRLNYTFGIWERPSAK 319


>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 41/188 (21%), Positives = 76/188 (40%)
 Frame = -1

Query: 739 IIVSDGSKDSTVXVAESYSIXYGSDXVKCLELIKNRGKGGAVRLGIQSSRGATILFADAD 560
           +I+ D S D T  VA+     YG D +         G G A   G++ + G  ++  DAD
Sbjct: 38  VIIDDASPDGTQEVAKELQKIYGEDKILLKPRSGKLGLGTAYIHGLKFATGDFVIIMDAD 97

Query: 559 GASKFEDLTKLEVALKDIVKCDPLKDVKTTSESLGIVIGSRAHLEKESLAKRNIFRNILM 380
               F    K    L + +K            +  IV+G+R + +   +   N+ R  + 
Sbjct: 98  ----FSHHPKY---LPEFIKLQK-------EHNYDIVLGTR-YAKDGGVYGWNLKRKFIS 142

Query: 379 YGFHFLVWLFTVKGIKDTQCGFKLFTRKAARICFESLHVNRWAFDVELLYIAQKLNIPIS 200
            G + L       G+ D    F+L+ +         +    + F +E++  A++ N  I 
Sbjct: 143 RGANLLASTVLGTGVSDVTGSFRLYKKPVLETLMSEVTSKGYVFQMEIIARAREHNYTIG 202

Query: 199 EIPVRWTE 176
           E+P+ + +
Sbjct: 203 EVPIAFVD 210


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 517 GRLLISSNLQILRHHLHLQTISLHLSN 597
           GR ++  N+++LR +LH + +  H++N
Sbjct: 128 GRAVLYPNMKVLRDYLHWRQVDCHINN 154


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = -1

Query: 247 DVELLYIAQKLNIPISEIPVRWTEIEG 167
           D +L+ IA+KLNI ++++ +RW+  +G
Sbjct: 206 DEKLVPIAKKLNISVAQLLIRWSLQKG 232


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 327 HSVASNFSLEKQQEYVLKAYM*TDGHLM*SYCISH 223
           H    NFSL + + Y++  Y+  +G      CISH
Sbjct: 44  HYCLLNFSLRENKNYLIIVYLPIEGFSANHMCISH 78


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 619 AVRLGIQSSRGATILFADADGASKFEDLTKLEVALKDIVKCD 494
           +V+  I+  R   ++    D    + DL+K  V+ +D+VKC+
Sbjct: 58  SVQKHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCE 99


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 493 DHISQYPLGRLLISSNLQILRHHLHLQTI 579
           D++ +YP+ +L  S+  QIL  + H Q I
Sbjct: 140 DNVGRYPVSKLSCSTKNQILALYTHSQPI 168


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 430 LEKESLAKRNIFRNILMYG 374
           L+  S AKR + RNIL+YG
Sbjct: 29  LKDHSKAKRTLCRNILLYG 47


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 169 LRFLSTSLVFRILECLIFVRYTITLHQMPICLHVSFQNIFLL 294
           +RFL+   ++ IL C+  V    + H+M  C   S  NI L+
Sbjct: 55  IRFLAKCFLY-ILRCMSTVSLLSSAHKMNCCNFYSNYNILLV 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,888
Number of Sequences: 5004
Number of extensions: 66453
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)