Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H23
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...   182   3e-46
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184...    52   6e-07
03_02_0017 + 5001812-5002062,5003849-5003977,5005045-5005108,500...    31   1.3  
12_01_0366 + 2779754-2779882,2780007-2780047,2780163-2780212,278...    28   6.7  
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254...    28   6.7  
09_04_0335 + 16791874-16792178,16792234-16792957                       28   6.7  
02_01_0770 - 5745149-5745366,5745569-5745614,5745695-5745802,574...    28   6.7  
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386...    28   8.9  

>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score =  182 bits (443), Expect = 3e-46
 Identities = 98/200 (49%), Positives = 126/200 (63%), Gaps = 6/200 (3%)
 Frame = -1

Query: 739 IIVSDGSKDSTVXVAESYSIXYGSDXVKCLELIKNRGKGGAVRLGIQSSRGATILFADAD 560
           +IV DGS D T  VA  +   +  D V+ L L +N GKG AVR G+  SRG  +L  DAD
Sbjct: 153 LIVDDGSTDHTSKVAFEFVRKHKIDNVRVLLLGRNHGKGEAVRKGMLHSRGELLLMLDAD 212

Query: 559 GASKFEDLTKLEVALKDIVKC--DPLKDVKTTSESLG----IVIGSRAHLEKESLAKRNI 398
           GA+K  DL KLE  ++ + K     L    + S+ L      V GSRAHLEK++LA R  
Sbjct: 213 GATKVTDLEKLEAQVRALAKKAESSLAPSSSPSQRLSDAEIAVFGSRAHLEKQALATRKW 272

Query: 397 FRNILMYGFHFLVWLFTVKGIKDTQCGFKLFTRKAARICFESLHVNRWAFDVELLYIAQK 218
           +RN LM GFH +V L    GI+DTQCGFK+FTR AAR  F ++ + RW FDVEL+Y+ + 
Sbjct: 273 YRNFLMKGFHLVVLLTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKH 332

Query: 217 LNIPISEIPVRWTEIEGSKV 158
           L IP++E+ V WTEI GSKV
Sbjct: 333 LRIPMAEVSVNWTEIPGSKV 352


>03_06_0508 +
           34417540-34417649,34418239-34418338,34418445-34418478,
           34418559-34418635,34418929-34419005,34419060-34419224,
           34419306-34419420,34419546-34419650
          Length = 260

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 40/190 (21%), Positives = 77/190 (40%), Gaps = 2/190 (1%)
 Frame = -1

Query: 739 IIVSDGSKDSTVXVAESYSIXYGSDXVKCLELIKNRGKGGAVRLGIQSSRGATILFADAD 560
           I+V DGS D T  + +     YG + V      +  G G A   G++ + G  ++  DAD
Sbjct: 44  IVVDDGSPDGTQDIVKQLQQIYGENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDAD 103

Query: 559 GASKFEDLTK-LEVALKDIVKCDP-LKDVKTTSESLGIVIGSRAHLEKESLAKRNIFRNI 386
            +    ++++ LE +   +        D K   E+   V+    +++   +   N+ R +
Sbjct: 104 LSHHMLEISETLEQSPLQLDSYQGYYTDKKKQKETGADVVTGTRYVQNGGVHGWNLMRKL 163

Query: 385 LMYGFHFLVWLFTVKGIKDTQCGFKLFTRKAARICFESLHVNRWAFDVELLYIAQKLNIP 206
              G + L       G  D    F+L+ R        S     + F +E++  A +    
Sbjct: 164 TSRGANVLAQTLLQPGASDLTGSFRLYKRNVLEDLISSCVSKGYVFQMEMIVRATRKGYH 223

Query: 205 ISEIPVRWTE 176
           I E+P+ + +
Sbjct: 224 IEEVPITFVD 233


>03_02_0017 +
           5001812-5002062,5003849-5003977,5005045-5005108,
           5007229-5007501
          Length = 238

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 135 CIQATTGVTFDPSISVHLTGISDIGMFNFCAIYNNSTSNAHLFTCKLS 278
           C QA  GV    + SV++ G++ I  FN   +Y NS       T  ++
Sbjct: 188 CAQAGGGVACAIAASVNMVGVALISAFNLFRLYGNSNGGGKATTTTMA 235


>12_01_0366 +
           2779754-2779882,2780007-2780047,2780163-2780212,
           2780824-2780968,2781298-2781354,2781448-2781571,
           2781798-2782259,2782493-2782564
          Length = 359

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 522 TSNFVKSSNFEAPSASANNIVAPLELCMPSLTAPPF 629
           ++N V  + F  PS+S+ ++VAP    MP  TA PF
Sbjct: 248 STNLVTPAFFAPPSSSSASLVAPASSFMP--TASPF 281


>11_01_0342 +
           2548147-2548275,2548385-2548425,2548521-2548570,
           2548830-2548974,2549854-2549859,2550122-2550245,
           2550422-2550877,2550960-2551013
          Length = 334

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 522 TSNFVKSSNFEAPSASANNIVAPLELCMPSLTAPPFPLFFINSRHFTXSLP 674
           ++N V  + F  PS+S+ ++V P    MP  TAPP      +++  T   P
Sbjct: 231 SANLVTPAFFTPPSSSSTSMVPPASSMMP--TAPPLHPTSASAQRATYGTP 279


>09_04_0335 + 16791874-16792178,16792234-16792957
          Length = 342

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 211 IPISEIPVRWTEIEGSKVTPVVAWIQMGCDL-GLIW-LKYRIG 89
           + +SE  +R+ EI+G   TP V    +  DL G +W + YR+G
Sbjct: 189 VKVSEGKLRYVEIDGFPDTPAVTMTTL-IDLDGAVWNMDYRVG 230


>02_01_0770 -
           5745149-5745366,5745569-5745614,5745695-5745802,
           5745887-5745946,5746097-5746178,5746960-5747062,
           5747140-5747245,5747612-5747740,5747932-5748030
          Length = 316

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 136 QMGCDLGLIWLKYRIGAWKIKSEK 65
           + GCDLGL WLK R+G ++ + E+
Sbjct: 288 EAGCDLGLRWLK-RLGDYEKQQEQ 310


>04_04_0861 +
           28836544-28836609,28838191-28838264,28838551-28838671,
           28838832-28839143,28839241-28839345,28839447-28839901,
           28840116-28840417,28840589-28840767,28841256-28841446,
           28841595-28841728,28841875-28842113
          Length = 725

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 507 ISFRATSNFVKSSNFEAPSASANNIVAPLE--LCMPSLT 617
           ISF+   +F KSS+   P+ S + + A LE  L  P LT
Sbjct: 458 ISFKEPGHFAKSSDTAQPAESGHQVNANLEEGLAQPLLT 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,377,572
Number of Sequences: 37544
Number of extensions: 376944
Number of successful extensions: 920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)