Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H22
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical...    30   1.6  
Z82265-3|CAB05173.1|  471|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF324054-1|AAK01415.1|  162|Caenorhabditis elegans Ly-6-related ...    28   6.3  

>AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical
           protein Y39B6A.48 protein.
          Length = 186

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -1

Query: 289 ILTGSKDWKYFDPETYS---DEAGQNSTGIIGGCHWITEVEIYYMLEDLSRNKSWPIVQS 119
           ++T S  +   +P T     DE+   S+G   G     +VE Y  +  LS   SW  +Q+
Sbjct: 9   LMTSSMTFSAINPATKLSNFDESFGRSSG--AGAPIPRQVECYSCMS-LSYQTSWKYLQT 65

Query: 118 KYLQQKIKTTRC 83
            Y+  K+ T RC
Sbjct: 66  TYIYPKVFTDRC 77


>Z82265-3|CAB05173.1|  471|Caenorhabditis elegans Hypothetical
           protein F02H6.5 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 195 TGLQRWKFIICWKISHAINHGRLFSQ 118
           T L+R +F++CW I   INHG + +Q
Sbjct: 199 TSLKRVRFLLCWDI---INHGAIGNQ 221


>AF324054-1|AAK01415.1|  162|Caenorhabditis elegans Ly-6-related
           protein HOT-2 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 184 EVEIYYMLEDLSRNKSWPIVQSKYLQQKIKTTRC 83
           +VE Y  +  LS   SW  +Q+ Y+  K+ T RC
Sbjct: 8   QVECYSCMS-LSYQTSWKYLQTTYIYPKVFTDRC 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,142,985
Number of Sequences: 27780
Number of extensions: 228571
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)