Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H21
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   107   7e-24
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119...    28   3.7  
01_06_0065 + 26107522-26107700,26110875-26111253                       28   4.9  
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130...    27   6.5  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  107 bits (256), Expect = 7e-24
 Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
 Frame = -3

Query: 372 LSTWI-LVKTARFKELAPYDPDWFYVRCXAILRHIYIRSPVGVKTVTKIFGGRKRNGVTP 196
           L  W+ +VKTARFKEL PYDPDW+Y R  +I R IY+R  +GV    KI+GGR+RNG  P
Sbjct: 33  LPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRP 92

Query: 195 SHFCRSSGSXARKALQSLEALKLVEI 118
            HFC+SSG+ +R  LQ L+ + ++++
Sbjct: 93  PHFCKSSGAISRNILQQLQKMGIIDV 118



 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 451 TVKDVEQDKIVKTVAAHXXKTGXVKVPEHMDPCK 350
           TVKDV   + VK  +AH  ++G +++PE +D  K
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVK 41



 Score = 31.5 bits (68), Expect = 0.40
 Identities = 11/16 (68%), Positives = 16/16 (100%)
 Frame = -2

Query: 106 GGRILTTQGRRDLDRI 59
           GGR++T+QGRRDLD++
Sbjct: 122 GGRLITSQGRRDLDQV 137


>01_01_0132 -
           1197988-1198206,1198255-1198356,1198518-1198821,
           1199221-1199292,1199384-1199420,1199527-1199585,
           1199844-1200128,1200293-1200465,1201020-1201213,
           1202245-1202374
          Length = 524

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 77  STLCGENATTAPELISTSFNASNDCKALR 163
           S LC    T  PE+ S    A+NDCK +R
Sbjct: 430 SDLCSGPRTITPEIYSQLVLAANDCKFVR 458


>01_06_0065 + 26107522-26107700,26110875-26111253
          Length = 185

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 3   STMTCCLACCLAFKRTWAAILSRSRLPCV-VRMRPPLLNLSQQ 128
           +T + CLACCL   R         RL C   R+RP     S+Q
Sbjct: 3   ATTSACLACCLVLLRHPPCPCPAWRLCCTPARLRPATRGRSRQ 45


>04_04_0918 -
           29411239-29411373,29412276-29412526,29412772-29413009,
           29413133-29414251,29414540-29415106
          Length = 769

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +2

Query: 86  CGENATTAPELISTSFNASNDCKALRAXLPDD---LQKCEGVTPLRL 217
           C E+A+     +S+S   SN  K L+  + D+   L++CEG+ PLRL
Sbjct: 496 CMESASIVFCTVSSSSKISN--KKLQLLVVDEAAQLKECEGLIPLRL 540


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,973,545
Number of Sequences: 37544
Number of extensions: 247259
Number of successful extensions: 614
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)