Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_H21
(503 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein pro... 107 2e-23
BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19 p... 107 2e-23
BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19 p... 107 2e-23
BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19 p... 107 2e-23
BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19 p... 107 2e-23
AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19 p... 107 2e-23
AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subun... 32 1.3
BC048194-1|AAH48194.1| 755|Homo sapiens tripartite motif-contai... 31 3.0
BC005847-1|AAH05847.3| 755|Homo sapiens tripartite motif-contai... 31 3.0
AK075255-1|BAC11500.1| 255|Homo sapiens protein ( Homo sapiens ... 31 3.0
>M81757-1|AAA89070.1| 145|Homo sapiens S19 ribosomal protein
protein.
Length = 145
Score = 107 bits (257), Expect = 2e-23
Identities = 48/82 (58%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = -3
Query: 363 WI-LVKTARFKELAPYDPDWFYVRCXAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 187
W+ VK A+ KELAPYD +WFY R + RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 33 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 92
Query: 186 CRSSGSXARKALQSLEALKLVE 121
R S S AR+ LQ+LE LK+VE
Sbjct: 93 SRGSKSVARRVLQALEGLKMVE 114
Score = 40.3 bits (90), Expect = 0.004
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -2
Query: 463 MRSVTVKDVEQDKIVKTVAAHXXKTGXVKVPEHMDPCK 350
M VTVKDV Q + V+ +AA K+G +KVPE +D K
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVK 38
Score = 31.9 bits (69), Expect = 1.3
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2
Query: 121 DKFRSGGRILTTQGRRDLDRI 59
+K + GGR LT QG+RDLDRI
Sbjct: 114 EKDQDGGRKLTPQGQRDLDRI 134
>BC018616-1|AAH18616.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 107 bits (257), Expect = 2e-23
Identities = 48/82 (58%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = -3
Query: 363 WI-LVKTARFKELAPYDPDWFYVRCXAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 187
W+ VK A+ KELAPYD +WFY R + RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 33 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 92
Query: 186 CRSSGSXARKALQSLEALKLVE 121
R S S AR+ LQ+LE LK+VE
Sbjct: 93 SRGSKSVARRVLQALEGLKMVE 114
Score = 40.3 bits (90), Expect = 0.004
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -2
Query: 463 MRSVTVKDVEQDKIVKTVAAHXXKTGXVKVPEHMDPCK 350
M VTVKDV Q + V+ +AA K+G +KVPE +D K
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVK 38
Score = 31.9 bits (69), Expect = 1.3
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2
Query: 121 DKFRSGGRILTTQGRRDLDRI 59
+K + GGR LT QG+RDLDRI
Sbjct: 114 EKDQDGGRKLTPQGQRDLDRI 134
>BC017386-1|AAH17386.1| 157|Homo sapiens ribosomal protein S19
protein.
Length = 157
Score = 107 bits (257), Expect = 2e-23
Identities = 48/82 (58%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = -3
Query: 363 WI-LVKTARFKELAPYDPDWFYVRCXAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 187
W+ VK A+ KELAPYD +WFY R + RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 45 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 104
Query: 186 CRSSGSXARKALQSLEALKLVE 121
R S S AR+ LQ+LE LK+VE
Sbjct: 105 SRGSKSVARRVLQALEGLKMVE 126
Score = 39.1 bits (87), Expect = 0.009
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -2
Query: 454 VTVKDVEQDKIVKTVAAHXXKTGXVKVPEHMDPCK 350
VTVKDV Q + V+ +AA K+G +KVPE +D K
Sbjct: 16 VTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVK 50
Score = 31.9 bits (69), Expect = 1.3
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2
Query: 121 DKFRSGGRILTTQGRRDLDRI 59
+K + GGR LT QG+RDLDRI
Sbjct: 126 EKDQDGGRKLTPQGQRDLDRI 146
>BC007615-1|AAH07615.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 107 bits (257), Expect = 2e-23
Identities = 48/82 (58%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = -3
Query: 363 WI-LVKTARFKELAPYDPDWFYVRCXAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 187
W+ VK A+ KELAPYD +WFY R + RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 33 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 92
Query: 186 CRSSGSXARKALQSLEALKLVE 121
R S S AR+ LQ+LE LK+VE
Sbjct: 93 SRGSKSVARRVLQALEGLKMVE 114
Score = 40.3 bits (90), Expect = 0.004
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -2
Query: 463 MRSVTVKDVEQDKIVKTVAAHXXKTGXVKVPEHMDPCK 350
M VTVKDV Q + V+ +AA K+G +KVPE +D K
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVK 38
Score = 31.9 bits (69), Expect = 1.3
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2
Query: 121 DKFRSGGRILTTQGRRDLDRI 59
+K + GGR LT QG+RDLDRI
Sbjct: 114 EKDQDGGRKLTPQGQRDLDRI 134
>BC000023-1|AAH00023.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 107 bits (257), Expect = 2e-23
Identities = 48/82 (58%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = -3
Query: 363 WI-LVKTARFKELAPYDPDWFYVRCXAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 187
W+ VK A+ KELAPYD +WFY R + RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 33 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 92
Query: 186 CRSSGSXARKALQSLEALKLVE 121
R S S AR+ LQ+LE LK+VE
Sbjct: 93 SRGSKSVARRVLQALEGLKMVE 114
Score = 40.3 bits (90), Expect = 0.004
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -2
Query: 463 MRSVTVKDVEQDKIVKTVAAHXXKTGXVKVPEHMDPCK 350
M VTVKDV Q + V+ +AA K+G +KVPE +D K
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVK 38
Score = 31.9 bits (69), Expect = 1.3
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2
Query: 121 DKFRSGGRILTTQGRRDLDRI 59
+K + GGR LT QG+RDLDRI
Sbjct: 114 EKDQDGGRKLTPQGQRDLDRI 134
>AF092907-1|AAD13668.1| 145|Homo sapiens ribosomal protein S19
protein.
Length = 145
Score = 107 bits (257), Expect = 2e-23
Identities = 48/82 (58%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = -3
Query: 363 WI-LVKTARFKELAPYDPDWFYVRCXAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHF 187
W+ VK A+ KELAPYD +WFY R + RH+Y+R GV ++TKI+GGR+RNGV PSHF
Sbjct: 33 WVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHF 92
Query: 186 CRSSGSXARKALQSLEALKLVE 121
R S S AR+ LQ+LE LK+VE
Sbjct: 93 SRGSKSVARRVLQALEGLKMVE 114
Score = 40.3 bits (90), Expect = 0.004
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = -2
Query: 463 MRSVTVKDVEQDKIVKTVAAHXXKTGXVKVPEHMDPCK 350
M VTVKDV Q + V+ +AA K+G +KVPE +D K
Sbjct: 1 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVK 38
Score = 31.9 bits (69), Expect = 1.3
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -2
Query: 121 DKFRSGGRILTTQGRRDLDRI 59
+K + GGR LT QG+RDLDRI
Sbjct: 114 EKDQDGGRKLTPQGQRDLDRI 134
>AB209470-1|BAD92707.1| 249|Homo sapiens proteasome beta 2 subunit
variant protein.
Length = 249
Score = 31.9 bits (69), Expect = 1.3
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -3
Query: 321 YDPDWFYVRCXAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSXARKAL 151
Y P R +LR P G + T + GGR+ G S CR G R+AL
Sbjct: 179 YTPTISRERAVELLRKCLEEGPGGAGSSTALGGGRRSVGQDRSSSCRRKGRGRRRAL 235
>BC048194-1|AAH48194.1| 755|Homo sapiens tripartite
motif-containing 56 protein.
Length = 755
Score = 30.7 bits (66), Expect = 3.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 460 RSVTVKDVEQDKIVKTVAAHXXKTGXVKVPEHMDPCKDSSLQRA 329
R + V D EQ++ +K + + G V VPE PC ++LQ A
Sbjct: 519 REILVAD-EQNRALKRFSLNGDYKGTVPVPEGCSPCSVAALQSA 561
>BC005847-1|AAH05847.3| 755|Homo sapiens tripartite
motif-containing 56 protein.
Length = 755
Score = 30.7 bits (66), Expect = 3.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 460 RSVTVKDVEQDKIVKTVAAHXXKTGXVKVPEHMDPCKDSSLQRA 329
R + V D EQ++ +K + + G V VPE PC ++LQ A
Sbjct: 519 REILVAD-EQNRALKRFSLNGDYKGTVPVPEGCSPCSVAALQSA 561
>AK075255-1|BAC11500.1| 255|Homo sapiens protein ( Homo sapiens
cDNA FLJ90774 fis, clone THYRO1001063. ).
Length = 255
Score = 30.7 bits (66), Expect = 3.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 460 RSVTVKDVEQDKIVKTVAAHXXKTGXVKVPEHMDPCKDSSLQRA 329
R + V D EQ++ +K + + G V VPE PC ++LQ A
Sbjct: 19 REILVAD-EQNRALKRFSLNGDYKGTVPVPEGCSPCSVAALQSA 61
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,542,687
Number of Sequences: 237096
Number of extensions: 1418469
Number of successful extensions: 3009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3009
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -