Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H21
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.45 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 257 LLESRLSPRSSVGANVMELHLHISA 183
           LL++RL+P SS+  ++   H H+S+
Sbjct: 268 LLKARLNPNSSLQPSLASHHSHLSS 292


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 102 PPLLNLSQQASMPP 143
           PP+ N+S  + MPP
Sbjct: 418 PPIPNMSNMSGMPP 431


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 18  CLACCLAFKRTWAAILSRSRLPC 86
           CL   L FKR ++  L +  +PC
Sbjct: 230 CLKVDLLFKREFSYYLIQIYIPC 252


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 18  CLACCLAFKRTWAAILSRSRLPC 86
           CL   L FKR ++  L +  +PC
Sbjct: 230 CLKVDLLFKREFSYYLIQIYIPC 252


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 284 SFVIFTFAHLLESRLSPRSSVGANVME 204
           +F+I  +A LL +R    + + ANV E
Sbjct: 418 AFIILQYAGLLRNRSEYLNHLRANVAE 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,257
Number of Sequences: 438
Number of extensions: 2174
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)