Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H19
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    35   0.014
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   2.1  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   3.7  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   3.7  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   6.4  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   8.5  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   8.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.5  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
 Frame = -1

Query: 584  LFYMLWSPICLVLSIPDSTKVSDHNSQWK*NL-FVNSILYSEV*CRYGVFVILLYVCFLC 408
            +F   WS +  +L  P+ TK   +  Q+K NL F +S+   +  C   V+ +LL  C L 
Sbjct: 1252 IFMFTWSLVNKMLICPEFTKQKKYYEQYKENLGFFDSLCIGDNECITRVYFLLLKACGL- 1310

Query: 407  NLTNSMCFLCAFEL*SVLPIC----LFLLQ 330
             + N + F  +  L  V+ +     LFLLQ
Sbjct: 1311 -IMNGLNFEASVMLEEVISLTEKLELFLLQ 1339


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 57  LCFQCIFQLXCLHIVSFMCSXCV-LVFDIKIK 149
           +C  CI    CL   SF+C  C+ L FD++I+
Sbjct: 294 ICRYCIDLRSCLVCDSFVCPSCISLDFDLQIQ 325


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 81  LXCLHIVSFMCSXCVLV-FDIKIKYIINLN 167
           + C+H+V+FMC   + + F  +I ++I  N
Sbjct: 97  IECIHLVNFMCHDSLKINFGPRINFVIGHN 126


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
 Frame = +1

Query: 217 WDLKLTSKSINEPNH-----RWPFWRKI 285
           WDL     SI +PNH     +WP W+K+
Sbjct: 63  WDLTKALMSI-DPNHPAHPHKWPLWKKL 89


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 388  HMLFVRLHR-KHTYNKITNTPYLHHTSEYKIEFT 486
            HM+    HR K+T +K+T+T   ++ S+Y++  T
Sbjct: 992  HMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILT 1025


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 397  FVRLHRKHTYNKITNTPYLHHTSEYKIEFTKRFHFHWELWSDTLVESGIL 546
            F  + + H+ NKI  T   +H S   ++     + + +LW+D    + +L
Sbjct: 992  FEAIWKGHSENKIPYTSLSNHLSTEIVKLDHDIYNYEKLWADVGFRNAVL 1041


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 316 FLCEICNRNKQMGRTDYNSN-AHKKHMLFVR---LHRKHTYNKITN-TPYLHHTSEYKIE 480
           F CEIC     MGR  ++ +   ++H+  ++   +     +N+IT+    L    +YK++
Sbjct: 397 FPCEICGNYVYMGRKAFDKHFTEQRHIYGLKCLGISPSPLFNQITSIDEALQLWQKYKVD 456

Query: 481 FTKR 492
             KR
Sbjct: 457 SKKR 460


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 416  FLCNLTNSMCFLCAFEL*SVLPICLFLLQISHKKKTVFS 300
            FL N+TN  C     +   +LP+C FL  + +   TVFS
Sbjct: 1097 FLENITN-WCSESGIKSLELLPVCCFLRFMYYFLPTVFS 1134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,059
Number of Sequences: 5004
Number of extensions: 70677
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)