Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H19
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0182 + 11307275-11307368,11307485-11307594,11307654-113078...    30   2.2  
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98...    29   2.9  
02_05_1355 - 35878060-35878257,35879455-35879691,35880089-35880217     29   2.9  
03_02_0928 + 12464325-12464498,12466494-12466679,12466929-124670...    28   6.7  

>11_03_0182 +
           11307275-11307368,11307485-11307594,11307654-11307856,
           11307879-11307964,11308861-11308934,11308936-11309078,
           11309485-11309594,11309645-11309787
          Length = 320

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 36  SVSHSVQLCFQCIFQLXCLHIVSFMCSXCVLVFDIKIKYIINL 164
           SV+ ++ +CF C++ L  +HI     S  + + ++K ++ I L
Sbjct: 252 SVAIAIVICFTCVYLLSYVHISVTSISVIMFIRNLKSRFCIRL 294


>10_01_0076 -
           987092-987671,987747-987812,988201-988363,988467-988548,
           989153-989202,989237-989270,990177-990239,990339-990403,
           990485-990560,991274-991353,991514-991628,991729-991830
          Length = 491

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 549 Y*TNR*PQHIKQYLRSQV*NGGSRIPRSAHNHNDGHYQYH-CPDQH 683
           Y T R  +H  +Y + Q  N     P     +++G YQYH   D+H
Sbjct: 444 YETERSKRHEHEYYQMQPNNTEPEGPEEGEAYDEGDYQYHQAADEH 489


>02_05_1355 - 35878060-35878257,35879455-35879691,35880089-35880217
          Length = 187

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 681 VGLDSGIGSDRRCGCVLTWESYFRHFTPVNVDIVLY 574
           VGL +    +R  G   +WE+  RH+  ++V +VLY
Sbjct: 104 VGLITRHDCERTSGYATSWENSIRHYGRLHVSMVLY 139


>03_02_0928 +
           12464325-12464498,12466494-12466679,12466929-12467021,
           12467212-12467394,12467506-12467608,12467695-12467865,
           12468086-12469084,12469178-12469254,12469485-12470337,
           12470878-12471000,12471526-12471878
          Length = 1104

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 340 NKQMGRTDYNSNAHKKHMLFVRLHRKHTYNKITN 441
           NK++     N+N HK+H+ FVR   +  YN++ +
Sbjct: 832 NKKLAAKQINNN-HKEHLSFVRDPEQMPYNQVNS 864


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,940,871
Number of Sequences: 37544
Number of extensions: 397002
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)