Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H14
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    28   0.47 
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    25   2.5  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    24   5.8  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    24   7.6  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.9 bits (59), Expect = 0.47
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 146 INNSNTDKRL*KLNIALILC 205
           +NN NTD ++  LNIA +LC
Sbjct: 647 LNNENTDIKISSLNIARLLC 666


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 144 CT-CAYLRSFFPSIMDRN 94
           CT C++L+ F P I DRN
Sbjct: 192 CTRCSFLKKFNPDIFDRN 209


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = -3

Query: 181 FSKPFIRITIVDMHLRLSKIIFSKYHGPE*NWFTGNILEMCK-NW*TQIPXC---CSLLE 14
           FS+    + I+D+HLR + I F +Y G   N      L++ + +  TQ+  C   C  L 
Sbjct: 676 FSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKCGALG 735

Query: 13  IN 8
           +N
Sbjct: 736 LN 737


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 156 VIRIKGFEN*I*HSYYVNFFNK-NDFQIYKTYP 251
           V+R++G       S+Y NFFN+ +D   + ++P
Sbjct: 575 VMRVRGSNGLRMSSFYGNFFNRSSDLCAFPSFP 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,797
Number of Sequences: 5004
Number of extensions: 24144
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)