Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H14
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415...    27   5.2  
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193     26   6.9  
02_02_0658 + 12720873-12720906,12721201-12721664,12723069-127232...    26   6.9  

>05_04_0091 +
           17839118-17839303,17840876-17840923,17841381-17841526,
           17841616-17841664,17842260-17842316,17842460-17842627,
           17842950-17843011,17843103-17843190,17843277-17843388,
           17843472-17843548,17843622-17843759,17844424-17844588,
           17844667-17844780,17845026-17845122,17845242-17845390
          Length = 551

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 23  TATXGDLRSPILAHFQNVPSKPVLFRSMILGKNDL 127
           TA+ GD RSP   H+ +   +P  ++  ILG  ++
Sbjct: 305 TASNGDPRSPQSLHYIDPSGRPNSYQQAILGVGEV 339


>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
          Length = 516

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = +2

Query: 53  ILAHFQNVPSKPVLFRSMILGKNDLR*AQVHINNSNTDKRL*KLNIALILC 205
           +L   +N+  KP+L  + ++GK ++  + +    S+  K+L +    ++ C
Sbjct: 315 LLNRLKNIDGKPILDFTQLVGKFEMTASSMSSKYSSATKKLKRKKTDMVAC 365


>02_02_0658 +
           12720873-12720906,12721201-12721664,12723069-12723227,
           12723308-12723424,12723570-12723721,12724594-12724685,
           12724787-12725464,12725551-12725803,12725804-12725888,
           12725969-12726037,12726489-12726668,12726989-12726994,
           12727526-12727624
          Length = 795

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 199 IMLIFLIKMISKFIKHILLFFKYS 270
           +ML +   M S F+ HILL F+Y+
Sbjct: 629 VMLCYYSVMRSTFVAHILLNFRYT 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,932,291
Number of Sequences: 37544
Number of extensions: 123547
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)