Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H12
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   4.9  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 85  NASNNHFHVTLDNNKEANNLHLKIYIPIKY 174
           N  NN+++   + N   NN + K+Y  I Y
Sbjct: 328 NNYNNNYNNYNNYNNNYNNNYKKLYYNINY 357


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 419 ISPRYFCLNWNANCTILNWITKISLRLNHFDPDIALYSSITTLKIVGFALIHP 261
           IS RY      A+C I    TK+++ +   D      ++ T L  +   +IHP
Sbjct: 193 ISKRYVLTA--AHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHP 243


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = -3

Query: 341 LNHFDPDIALYSSITTLKIVG---FALIHP 261
           L+H DPD+  Y       +VG   F   HP
Sbjct: 320 LSHVDPDVVQYFGYLPQDMVGRSLFDFYHP 349


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = -3

Query: 341 LNHFDPDIALYSSITTLKIVG---FALIHP 261
           L+H DPD+  Y       +VG   F   HP
Sbjct: 26  LSHVDPDVVQYFGYLPQDMVGRSLFDFYHP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,957
Number of Sequences: 438
Number of extensions: 3516
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)