Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H05
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    28   1.2  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   5.0  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   6.5  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   6.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   6.5  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   8.7  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 223  DVRHPLYGIAYIVSLVGLHLTHHCFFFVL 137
            D++  + G+  +  L+G HLTHH   +V+
Sbjct: 1154 DIKIKIGGLGVMAELMGKHLTHHDLIWVV 1182


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 228 QNRLKWTDTIETNNNKINISNA 293
           QN+L W  T + +N  +NI NA
Sbjct: 384 QNQLLWPSTFDDDNFTLNIMNA 405


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 349 IKSNFLATCGEYKFINRDSLDILNLCPRFYLRAAK 453
           ++S     C ++ ++N D +DI++  P FY R  K
Sbjct: 13  LESQIDGVCPKF-YVNVDDIDIIHEPPEFYQRLKK 46


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 518 INNSSRTTSKCQANESETSNV--AFAARR*NLGHKFSISSESRLMNLYS 378
           ++N S   S     + ET +V   +  RR NLG    +   S L N+Y+
Sbjct: 135 LDNRSENQSVIVQGQGETPSVIITYDVRRPNLGSTSFVEMSSALSNIYN 183


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 417  KFMPEILSPRCKSYVRGLRFICLTFASGSRRIVDI 521
            KF+ ++     + ++ GL+  CL F S S  +  I
Sbjct: 954  KFLEKVKQVTLQQFLEGLKIYCLPFFSSSNNLAVI 988


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 255 IETNNNKINISNALWFPLISNRPHETVCKKNYKEQFFGNLR*IQ 386
           +E   +  N  N     L+   P+ T+  KNY+  F+G ++ IQ
Sbjct: 817 LEAGQDSTNTYNQAPLDLLMGLPYITM--KNYRNVFYGGVKDIQ 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,638
Number of Sequences: 5004
Number of extensions: 47536
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)