Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H05
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.77 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   4.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   4.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 234 RLKWTDTIETNNNKINISNALWF 302
           R K  +T  T  + +N+S+A+WF
Sbjct: 594 RFKLANTDGTEEDALNLSSAVWF 616


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 428 GHKFSISSESRLMNLYSPQVAKKLLFIIFFTHS 330
           GH+ +I+S    + LY P V +    II   H+
Sbjct: 256 GHESNIASVLHALQLYYPHVPEYSSSIIMELHN 288


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 428 GHKFSISSESRLMNLYSPQVAKKLLFIIFFTHS 330
           GH+ +I+S    + LY P V +    II   H+
Sbjct: 271 GHESNIASVLHALQLYYPHVPEYSSSIIMELHN 303


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 533 VLCFAYFCLLGSLGTFHTLXDTHSTA 610
           V+C  Y   L  L T HTL D  STA
Sbjct: 290 VICEDYQAFLKHLNTEHTL-DDRSTA 314


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +3

Query: 237 LKWTDTIETNNNKINISNALWFPLISNRP 323
           + W   +  +    N++N LW P I   P
Sbjct: 54  INWRSYVVCDVAYNNVNNWLWTPFIERGP 82


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 423 MPEILSPRCKSYVRGLRFI 479
           +P  LSP   S ++G+RFI
Sbjct: 439 VPRYLSPDVISALKGVRFI 457


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +3

Query: 399 RFTRYTKFMPEIL-SPRCKSYVRGLRFICLTFASGSRRIVDIILREYYALHTSACWGAWG 575
           RF R+T  + ++L SPR K        +       + + +      YY  HT     ++G
Sbjct: 32  RFRRFTIELDKVLESPRGKYEFSKYDKLKKKLEEWTGKNITTPWDYYYIYHTLVAEQSYG 91

Query: 576 LSTPXLTH 599
           L+ P  T+
Sbjct: 92  LTLPSWTN 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,508
Number of Sequences: 438
Number of extensions: 3627
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)