Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H04
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578...    28   7.2  
11_06_0136 + 20481305-20481725,20483256-20483950                       28   9.5  
03_05_0665 + 26554362-26554796                                         28   9.5  

>04_04_1267 -
           32257035-32257337,32257423-32257570,32257656-32257893,
           32257994-32258351,32258791-32258969,32259071-32259175,
           32259539-32260871
          Length = 887

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 166 RITKLYTKIFGV*KYTDTSDPLIK 237
           +I K YTKIFG  +Y  + DP  K
Sbjct: 640 KIPKFYTKIFGTLRYLVSEDPASK 663


>11_06_0136 + 20481305-20481725,20483256-20483950
          Length = 371

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 634 CRLNSFQATIFFSNGSYKVQLYIDFLCHG 720
           C L SFQ T++  NG   +QLY+D +  G
Sbjct: 180 CELESFQDTLYAENG---LQLYLDSVISG 205


>03_05_0665 + 26554362-26554796
          Length = 144

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 484 NL*FISSIHKILTLKYYFNPLVSCKHSIHH 573
           +L  ISS+H   TL     PLV  +H+ HH
Sbjct: 49  HLPLISSLHTAPTLTTIATPLVGAQHTRHH 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,838,605
Number of Sequences: 37544
Number of extensions: 342945
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)