Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H04
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80955-3|AAM97944.1|   95|Caenorhabditis elegans Mlp/crp family ...    39   0.003
U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family ...    39   0.003
U80955-1|AAM97945.1|  113|Caenorhabditis elegans Mlp/crp family ...    39   0.003
Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81048-3|CAB02841.1|  407|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>U80955-3|AAM97944.1|   95|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform a protein.
          Length = 95

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = -1

Query: 777 YGXNFGPKGVGFGLGAGTLT 718
           +G  FGPKGVGFGLGAG LT
Sbjct: 63  HGRKFGPKGVGFGLGAGCLT 82


>U80955-2|AAM97946.1|  181|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform c protein.
          Length = 181

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = -1

Query: 777 YGXNFGPKGVGFGLGAGTLT 718
           +G  FGPKGVGFGLGAG LT
Sbjct: 131 HGRKFGPKGVGFGLGAGCLT 150



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = -1

Query: 765 FGPKGVGFGLGAGTLTM 715
           +GPKG+GFG+GAG+LTM
Sbjct: 67  YGPKGIGFGIGAGSLTM 83


>U80955-1|AAM97945.1|  113|Caenorhabditis elegans Mlp/crp family
           (muscle lim protein/cysteine-rich protein) protein 1,
           isoform b protein.
          Length = 113

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = -1

Query: 777 YGXNFGPKGVGFGLGAGTLT 718
           +G  FGPKGVGFGLGAG LT
Sbjct: 63  HGRKFGPKGVGFGLGAGCLT 82


>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +2

Query: 350 IVLVRYIPSIFLCLFVLKLQYFMKNL*TKGPDTFIIHLYI 469
           I L+  IP++F+ +F+LK+  F++ L TK  D    H+++
Sbjct: 32  IPLIYLIPTVFVIMFILKV--FIRRLLTKKHDLMNPHVFL 69


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 192 LWCIKIYRHFRSSYKDLVGRNDCLNAILYAFTG*LYLNTQNMIL 323
           +WCI+++ HF  +Y+D  G + C N      +G    N  N++L
Sbjct: 242 VWCIRVFFHFVLNYQD--GSDYCWNYFHSTLSGPADENEYNVLL 283


>Z81048-3|CAB02841.1|  407|Caenorhabditis elegans Hypothetical
           protein C41G7.4 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 538 NPLVSCKHSIHHY*IQFN-KW*DSSIGSSSYVLCRLNSFQATIFFSNGSYKVQLYIDFLC 714
           NP+V C  + +    + N K     I SSS+   +  SF   + FSN +      I F C
Sbjct: 116 NPIVPCYENENCPCYKLNQKLQGLQINSSSHPPTKFASFDP-VMFSNSNSTFDRCIGFSC 174

Query: 715 HGQCACTQTETNS 753
              C C    TN+
Sbjct: 175 SEACGCKGNCTNN 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,894,883
Number of Sequences: 27780
Number of extensions: 360125
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)