Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_H03
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 92 8e-20
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 29 0.63
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 29 0.63
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.63
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 29 0.83
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 26 5.8
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 7.7
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 25 7.7
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 25 7.7
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 25 7.7
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 91.9 bits (218), Expect = 8e-20
Identities = 43/124 (34%), Positives = 70/124 (56%)
Frame = -3
Query: 661 ADHYQMSGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEGFAQFHWRPRP 482
A+H+ M+ +EWDP+GRYV T + + K++ GY + F+G +LR M F QF WRPRP
Sbjct: 567 AEHFGMTELEWDPSGRYVTTSSTIWRHKLENGYRLCDFRGTLLREEMIGEFKQFIWRPRP 626
Query: 481 PTLLSXXXXXXXXXXXXKYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEW 302
P+ L+ Y F+ +D S A++EL A+R + + ++ +YR+ I
Sbjct: 627 PSPLTKEDMKKIRKKLKDYNRLFDEEDIAEQSSANRELAARRRQLISEWQKYRDEVIARV 686
Query: 301 NEQK 290
E++
Sbjct: 687 AEER 690
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 188 TNRHRVVAIRYARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLF 33
+NR +A R S GCD N T PD +Y + + TD +L F
Sbjct: 400 SNRPNRIA-EIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFF 450
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 188 TNRHRVVAIRYARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLF 33
+NR +A R S GCD N T PD +Y + + TD +L F
Sbjct: 320 SNRPNRIA-EIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFF 370
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 29.1 bits (62), Expect = 0.63
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 427 YYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRRLELRDY 263
Y F+ K+R + KE+ AK T+Q +K TE + + E++ + LE RDY
Sbjct: 226 YQFSFDEKEREEQLLSLKEIHAKVTQQQRKNTEDVLTLRDKKLEERRKFLE-RDY 279
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 28.7 bits (61), Expect = 0.83
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = -3
Query: 643 SGIEWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILR-----RVMKEGFAQFHWRP 488
+GI W P G ++ L+ +D YI+ G + R+++ GF+ F W P
Sbjct: 193 TGIHWSPDGNWLAV----LENVLDAVVYIYHRTGLLFHEYRPNRLIEVGFSDFEWSP 245
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 146 RSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLFSTSTN 18
R S G P RT+P F + T S D + F STS++
Sbjct: 494 RPPSPGIVTPPQRTSPSFFVSPTESTRQSLDSRRSFEHSTSSS 536
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 197 ERRTNRHRVVAIRY-ARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLFSTST 21
++R+ R R + ARL++E G D PE + + + T + + + F+ T
Sbjct: 96 QQRSRRFRTAKDAHDARLKAERNGEDFPEEQFDSNCITPGTTFMERVSRQLYYFIHKKVT 155
Query: 20 NE 15
N+
Sbjct: 156 ND 157
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 388 SKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPR 284
S A KE+V + E+ S+I+ W E KP+
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQ 241
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 346 MKKFTEYRESKIQEWNEQKPRRLEL 272
MKKF+E I EW E + R LE+
Sbjct: 352 MKKFSESPIEFINEWIESQSRDLEI 376
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 518 LHHSPEYLALERPDVIAAIHFTFERRHTCNYIASCWIP 631
+H +L++E P +I +H+ T +A W P
Sbjct: 110 VHADVRFLSVEMPKIIEHLHYRIIDVSTIKELAKRWCP 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,937
Number of Sequences: 5004
Number of extensions: 43766
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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