Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_H03
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    83   1e-16
Z66496-3|CAA91279.2|  570|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...    28   5.4  
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z68118-6|CAA92187.1|  311|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
 Frame = -3

Query: 664 VADHYQMSGIEWDPTGRYVVTGVSSL--KCKMDCGYYIWSFQGKILRRVMKEGFAQFHWR 491
           V +H   +   WDPTGRY VT  S+L  +   D GY I++FQG+ L R   +  AQF WR
Sbjct: 554 VIEHPLFNKGYWDPTGRYFVT-CSTLGGRAGADLGYRIFTFQGRELCRKNLDRLAQFKWR 612

Query: 490 PRPPTLLSXXXXXXXXXXXXKYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKI 311
           PRPP  LS            K  ++F  +D     +AS+E+V KR + M  F   R    
Sbjct: 613 PRPPVKLSEQKQREIKKNLKKTAAKFIKQDDDEKCRASQEVVEKRRKIMAAFDIIRSRNR 672

Query: 310 QEWNEQKPRRLELRDYVDTDG-LDTD 236
           ++ +  +  R+ LR+ VDT+  LD D
Sbjct: 673 EQLDATRDERISLRNGVDTEAQLDED 698


>Z66496-3|CAA91279.2|  570|Caenorhabditis elegans Hypothetical
           protein E04D5.1a protein.
          Length = 570

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -3

Query: 634 EWDPTGRYVVTGVSSLKCKMDCGYYIWSFQGKILRRVMKEG---FAQFHWRP 488
           +W P G++ VT  ++ + ++D  Y  W + G++L     E      +  WRP
Sbjct: 368 DWAPDGQHFVTCTTAPRLRIDNSYRFWHYTGRMLAETHFESPKELWEVRWRP 419


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 144 PQTCVAYSDYSMTVCSSFTKNSITSSTVFT 233
           P TC +Y   S T C+ + +N   +ST++T
Sbjct: 228 PATCTSYMPDSTTKCAEYARNGFCTSTMYT 257


>AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical
           protein T05B4.12 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 150 TCVAYSDYSMTVCSSFTKNSITSSTVFT 233
           TC +Y+  S T C+S+ KN   ++T +T
Sbjct: 202 TCTSYAADSSTSCTSWAKNGFCTNTFYT 229


>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 322 ESKIQEWNEQKPRRLELRDYVDTDGLDTD 236
           E  +QEW   +   L+LR Y+D +  DT+
Sbjct: 176 EILLQEWEHARDDLLKLRAYIDANPFDTE 204


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 126 AAS*LRPQTCVAYSDYSMTVCSSFTKNSITSSTVFTA 236
           +A+  R  TC ++   S T C +++ N   ++T +TA
Sbjct: 195 SATTTRSSTCTSFISDSSTACRAWSLNGFCTNTFYTA 231


>Z68118-6|CAA92187.1|  311|Caenorhabditis elegans Hypothetical
           protein R01E6.6 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 421 SQFESKDRMRSSKASKELVAKRTEQMKK 338
           +  + KDR +SS+ SK +   RT+ M+K
Sbjct: 64  TSIKDKDRPKSSRESKNIEISRTKSMRK 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,791,557
Number of Sequences: 27780
Number of extensions: 249281
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)