Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_G23
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 166 3e-42
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.91
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 1.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 2.1
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 2.8
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 4.9
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 6.4
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 26 6.4
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 6.4
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 6.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 6.4
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 166 bits (404), Expect = 3e-42
Identities = 83/140 (59%), Positives = 98/140 (70%), Gaps = 1/140 (0%)
Frame = -1
Query: 728 SGTVFFDQQDEKSPVVVXGEVQGL-TKGKHGFHVHXFGDNTNGCTSAGAHFNPEKQDHGG 552
SG V F+Q D+ S V V ++ G K GFH+H FGDNTNGCTSAG HFNPE + HG
Sbjct: 15 SGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGD 74
Query: 551 PSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHE 372
++AVRHVGDLGN+E+ + G K + DS ISL G NSIIGRT+V+HA DDLG G E
Sbjct: 75 RTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKGTSE 133
Query: 371 LSKTTGNAGGRIACGVIGLA 312
S TGNAG R ACGVIG+A
Sbjct: 134 ESLKTGNAGARNACGVIGIA 153
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 28.7 bits (61), Expect = 0.91
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +3
Query: 282 TYEK*KYLNLSQANDSTSNTATSITSGLT*LMATE----SQVIRVSMDN*SATNDAVRSM 449
T++K + N + D+ S+ TS + G++ + + S + ++ ++ S+TND +R +
Sbjct: 492 TFDKAQLSNTEDSYDNISH-GTSYSEGVSSIHMVKGERGSNNLELTSESLSSTNDTIRRL 550
Query: 450 KRDLRIL 470
+RDL L
Sbjct: 551 QRDLLFL 557
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -2
Query: 586 LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKILRSLFM 446
L++T + + +PVLLY + ++ + L++ ES + + KIL +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -2
Query: 718 FSSISRMKSHLLLFXERSRA*LRVNTVSMCTXLVTTQMVAHQLELISTLKNKIMVVPVLL 539
FSS+S + F S + N S + TT ++ + T + I+ P++
Sbjct: 508 FSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTSSSLIISSPIIS 567
Query: 538 YAMSATSVTLRQLK---TLESLKYQSKILRSLFMDLTASLVAL 419
+++ATS + L T + Y S ++ S D ++SL+ +
Sbjct: 568 SSLTATSTSTPALTHSITPSNTSYTSSLIPSSSTDYSSSLITV 610
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Frame = -3
Query: 348 WW-PYC-----LWSHWLG*DLNTFIFHMLGLVLQ 265
WW PY +WS W+ +L T FHM + LQ
Sbjct: 413 WWVPYLEYVRFMWSPWIIDNLGTVSFHMYVIYLQ 446
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 271 YQAQHMKNESI*ILAKPMTPQAI 339
Y +NES +LAKPMTP +
Sbjct: 618 YDPSTSENESASVLAKPMTPPGL 640
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 542 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 459
A R DL NI +ED V+ S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 70 ILHNFRNAIKKNFITSYRLTTTTD 141
+ HNFRN + +N + S LT D
Sbjct: 323 VFHNFRNGVCRNLVCSDLLTRGID 346
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 580 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 479
STLK + + PV L A+ ++LR L ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -1
Query: 524 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 345
D+ NI+ ++ + ++++ Q++ N + R + + L L H L+ G AG
Sbjct: 431 DIINIDIEKEKTIEEIAMGFIQVA----NETMCRPIRKLTESRGLDLSAHHLA-VFGGAG 485
Query: 344 GRIACGVIGLAKI 306
G+ AC + L I
Sbjct: 486 GQHACAIASLLNI 498
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 28 INACTKDNVKPKIA-ILHNFRNAIKKNFITSY-RLTTTTDYAYIFSLSDRLILPSKTL 195
++ T D V+ K+ L N+++ I K ++ T ++ +FSL +RL LP+ L
Sbjct: 928 LSELTDDVVQKKVLESLDNYKSGIWKLVLSGLPNCKTVFEHLLLFSLEERLDLPAAFL 985
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,832
Number of Sequences: 5004
Number of extensions: 52895
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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