Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_G23
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 191 6e-49
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 189 2e-48
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 173 9e-44
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 140 1e-33
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 53 3e-07
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 38 0.008
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 29 5.1
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 5.1
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 6.7
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 6.7
03_06_0131 - 31900700-31900992,31901039-31901720 28 8.9
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 191 bits (465), Expect = 6e-49
Identities = 86/137 (62%), Positives = 99/137 (72%)
Frame = -1
Query: 725 GTVFFDQQDEKSPVVVXGEVQGLTKGKHGFHVHXFGDNTNGCTSAGAHFNPEKQDHGGPS 546
GT+ F Q+ + P V G V GL G HGFH+H GD TNGC S G H+NP ++HG P
Sbjct: 134 GTIHFVQEGD-GPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPE 192
Query: 545 SAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELS 366
RH GDLGN+ A ED GV + + DSQI L GPNSIIGR +VVHADPDDLG GGHELS
Sbjct: 193 DETRHAGDLGNVTAGED-GVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELS 251
Query: 365 KTTGNAGGRIACGVIGL 315
KTTGNAGGR+ACG+IGL
Sbjct: 252 KTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 189 bits (461), Expect = 2e-48
Identities = 88/137 (64%), Positives = 99/137 (72%)
Frame = -1
Query: 725 GTVFFDQQDEKSPVVVXGEVQGLTKGKHGFHVHXFGDNTNGCTSAGAHFNPEKQDHGGPS 546
GT+FF Q+ + P V G V GL G HGFHVH GD TNGC S G HFNP ++HG P
Sbjct: 16 GTIFFSQEGD-GPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQ 74
Query: 545 SAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELS 366
RH GDLGNI A D GV V++ DSQI L G +SIIGR +VVHADPDDLG GGHELS
Sbjct: 75 DENRHAGDLGNITAGAD-GVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELS 133
Query: 365 KTTGNAGGRIACGVIGL 315
KTTGNAGGR+ACG+IGL
Sbjct: 134 KTTGNAGGRVACGIIGL 150
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 173 bits (422), Expect = 9e-44
Identities = 79/133 (59%), Positives = 90/133 (67%)
Frame = -1
Query: 704 QDEKSPVVVXGEVQGLTKGKHGFHVHXFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVG 525
QD++ P V V GLT G HGFH+H FGD TNGC S G HFNP HG P VRH G
Sbjct: 72 QDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAG 131
Query: 524 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 345
DLGNI A GV + +I D QI L GPNS++GR VVH DDLG GGHELS +TGNAG
Sbjct: 132 DLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAG 190
Query: 344 GRIACGVIGLAKI 306
GR+ACGV+GL +
Sbjct: 191 GRLACGVVGLTPL 203
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 140 bits (339), Expect = 1e-33
Identities = 66/116 (56%), Positives = 76/116 (65%)
Frame = -1
Query: 728 SGTVFFDQQDEKSPVVVXGEVQGLTKGKHGFHVHXFGDNTNGCTSAGAHFNPEKQDHGGP 549
+G + F Q V G V GL G HGFH+H FGD TNGC S G HFNP + HG P
Sbjct: 24 AGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAP 83
Query: 548 SSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLG 381
S RHVGDLGNI A +D GV + I+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 84 SDDERHVGDLGNIVANKD-GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 52.8 bits (121), Expect = 3e-07
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Frame = -1
Query: 683 VVXGEVQGLTKGKHGFHVHXFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEA 504
+V GL+ GKHG+ ++ FGD T G S G +NP P +GDLG +EA
Sbjct: 191 IVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEA 244
Query: 503 IEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA--DPDDLGLGGHELSKTTG 354
E G + S ++ + +IGR++ ++A D D G+ ++++ G
Sbjct: 245 GE-KGEAQFSASKEKLKV---VDLIGRSIALYATEDRSDPGIAAAVIARSAG 292
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -1
Query: 692 SPVVVXGEVQGLTKGKHGFHVHXFGDNTNGCTSAG 588
S + V V GL HGFHVH G TNGC G
Sbjct: 35 SLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = -2
Query: 724 ELFSSISRMKSHLLLFXERSRA*LRVNTVSMCTXLVTTQMVAHQLELISTLKNKI--MVV 551
+L SI R+ ++++ + + S A R+ VS C L+ + H +LIS +++ + MVV
Sbjct: 388 DLRPSILRLINNIIGYWKDSEA--RIKVVSFCHMLIQLAISTHNDKLISFVQDNLIPMVV 445
Query: 550 PVLLY 536
L++
Sbjct: 446 RCLIF 450
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 446 GPNSIIGRTLVVHADPDDLGLGG 378
GP + +GR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.3 bits (60), Expect = 6.7
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = -1
Query: 590 GAHFNPEKQDH--GGPSSAVRHVGD--LGNIE---AIEDSGVTKVSIQDSQISLHGPNSI 432
GA +PE H G V D L NI A+ G+ V+ D+++SL
Sbjct: 222 GASHDPEALLHIAQGSRGTYSFVDDDNLANIAGALAVCLGGLKTVAAVDTRVSLKAAELS 281
Query: 431 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 321
G +V D GG+E S G A G + GV+
Sbjct: 282 GGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 313
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -1
Query: 617 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 438
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 524 DLGNIEAIEDSGVTKVSIQDSQISLHGPNS 435
D+ ++ + DSG +I +S HGPNS
Sbjct: 120 DVDHLSILTDSGAVHRAISGEPVSEHGPNS 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,682,404
Number of Sequences: 37544
Number of extensions: 345873
Number of successful extensions: 879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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