Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G22
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0289 - 21969248-21973516                                         28   5.4  
01_01_0536 - 3926450-3928447                                           27   7.2  
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410...    27   9.5  

>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 90  ATTRXGRGAREEDQRDEAGSG 28
           A  + G G REED++DE G G
Sbjct: 435 AVRQGGGGEREEDEKDERGDG 455


>01_01_0536 - 3926450-3928447
          Length = 665

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 270 AEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSC 410
           A V+W   I+     G+  +S  + V  +R S +  AVT V +L +C
Sbjct: 125 APVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSAC 171


>01_01_0558 +
           4098383-4098510,4100462-4100572,4100765-4100853,
           4100974-4101107,4101337-4101435,4102619-4102994,
           4103883-4104337,4104419-4107409
          Length = 1460

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  GRCHAXKKHSKTKAFCKSKVIHENY*SI 165
           GRC+A  K  KT+ +   +++ E Y S+
Sbjct: 25  GRCNAVLKEHKTRLYILGRILDEKYGSL 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,628,516
Number of Sequences: 37544
Number of extensions: 176352
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)