Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G19
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   7.5  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   9.9  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
 Frame = +2

Query: 428  YFDTALQAF*LQFFVLYYKFNIFGT---------LYARLLFTSCIFI*N 547
            YF     AF   F V Y  +++FG           Y +L+FT+ IFI N
Sbjct: 1383 YFGWCSIAFIQAFLVFYVTYSLFGMKELNDNNIFAYGQLIFTAAIFIMN 1431


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 70  AKPLPTAR*IHNVCFNMSIMKNIY--DLPSS 156
           A+P P    I N C N +  +N++  +LPSS
Sbjct: 279 ARPSPLPESIQNFCSNTAASRNVFIGNLPSS 309


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 387 IGLKVKIYSFVNYITLIQRCKHFDYSSLCYT 479
           +G K+  Y +V  + LI   KHF Y  L YT
Sbjct: 334 LGRKIVSYIYVK-LDLIINSKHFGYLILLYT 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,382
Number of Sequences: 5004
Number of extensions: 48621
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)