Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G19
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)              30   1.5  
SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                28   6.0  

>SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)
          Length = 774

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 42  HGLQQCQGQSQAAAYRKINTQCLFQYE----YNEKYLRFTVIIK 161
           HG Q   GQS   AY K +T C F Y+    Y++KY + T + +
Sbjct: 32  HGCQPDDGQSYTGAYHK-HTDCGFGYKVVCTYDDKYTKQTQLYR 74


>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 435 IQRCKHFDYSSLCYTINLIFSVHCMLAFFLHPVFLFKIKYVF 560
           ++ C HF ++ +C    L F++ C LAF L     F + Y F
Sbjct: 283 LRLCVHFAFALMCA---LAFTLICALAFTLMCALAFAMMYAF 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,282,696
Number of Sequences: 59808
Number of extensions: 346996
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)