Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G17
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910...    30   2.0  
03_04_0006 + 16257288-16259522                                         29   4.7  
01_06_0656 - 30926858-30927040,30927141-30927281,30927373-309274...    29   6.2  

>07_03_1385 +
           26189034-26189294,26189427-26189636,26191016-26191092,
           26191196-26191340
          Length = 230

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 741 PVFLNRSIPEDENIKAKL-EPYAKIVHDAENVPIGS 637
           P F +  +P+   I  ++  PY   VH AENVP G+
Sbjct: 71  PNFPDNPLPDSHRISLRVTSPYGNSVHYAENVPSGN 106


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 31/95 (32%), Positives = 38/95 (40%)
 Frame = -2

Query: 342 FKGPWLLQVSGLRVTYNITLPEGNRVTSVVVGKNQTPLDVEKMYNVITTSFLCDGGDGFT 163
           FK  WL    GLRV Y    P  N V S    +N T LD   +Y  +  SF  D      
Sbjct: 419 FKAVWLADSHGLRVVYEKKGP--NSVFSTAWNQN-TALDT--LYVCVGPSFSADKPLQIY 473

Query: 162 MIKDHKKNEVVVGRDQQVFRAYVEKHSPLSVEPDG 58
            I D      + GR Q+   A    ++  S  PDG
Sbjct: 474 AIHD---VSALGGRQQRRLTAGASNNAFPSSSPDG 505


>01_06_0656 -
           30926858-30927040,30927141-30927281,30927373-30927489,
           30927696-30927784,30927870-30928010,30928084-30928171,
           30928280-30928342,30928544-30928699,30928778-30928870,
           30929095-30929176,30929426-30929493,30929575-30930633
          Length = 759

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 532 GTRFSFAPLHKSID*QISNSAFTVH 606
           G   SFAPLHKSID Q+  +A  +H
Sbjct: 625 GCPVSFAPLHKSID-QLRKAANKIH 648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,871,450
Number of Sequences: 37544
Number of extensions: 575848
Number of successful extensions: 1372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)