Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G17
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 477 SLSKPLYCHAA*ATRTLCRYPI 542
           SLS+PL  H +  T  L +YPI
Sbjct: 619 SLSEPLRIHVSPTTYILLKYPI 640


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/57 (19%), Positives = 28/57 (49%)
 Frame = -2

Query: 756  QWEGGPVFLNRSIPEDENIKAKLEPYAKIVHDAENVPIGSSNKTYHFEDCVYGECTV 586
            Q EG  + + +S+ + + I+ +      ++ D+E+  + +   T+ +   V   CT+
Sbjct: 1633 QCEGDSLNVAKSLQDHDCIRQERTQQRNVISDSESGRLDTEMSTWGYHHNVNKHCTI 1689


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 756 QWEGG-PVFLNRSIPEDENIKAKLEPY 679
           +W+ G P  LN  +  DE+   KL PY
Sbjct: 69  RWKNGVPSNLNFFLKNDESESPKLNPY 95


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 529 QRVLVAYAAWQYKGFDNE 476
           QR ++ +A+W Y G+  E
Sbjct: 143 QRCVLKWASWTYDGYQLE 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 259,710
Number of Sequences: 438
Number of extensions: 6573
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)