Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G16
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    36   0.008
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    28   1.6  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         27   2.8  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    26   4.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.6  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = +2

Query: 395 RIFFNNTVFSNYNRSAFSYNADSRMNNCTSSYGYITL*GTVFADS 529
           R+ + NTV S+    AF+YN D++  NC  S+ Y T+   VFA++
Sbjct: 771 RVLWINTVQSDSTIKAFTYNVDTKQLNCIKSWKYKTV-CLVFAEA 814


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 256 RSFVGEEVKVGSGCVIGAACTLTAPQILADNTVI 155
           ++ +   VK+G+ C I     + A  ++ DNT+I
Sbjct: 381 KAILANSVKIGNNCSIEDGAIVAAGVVIGDNTII 414


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 284 VTIDRLQFASNFENIVCTYKQWLWGILLFITLFMY 388
           +T+ + +F ++F N+   +  WL   +LF  + +Y
Sbjct: 61  ITLAKTEFKNSFSNLHFFFLFWLLNFILFFRIHLY 95


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 286 HVGESNVFECRSFVGEEVKVGSGCVIGAACTL 191
           H+G  + FE R   G+   +  GC     CTL
Sbjct: 346 HLGTCDTFEERQIGGDRFNLFEGCPKAKTCTL 377


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 601 EFFNLPKILFFFENFYGITNFNS 669
           +F+NLPK+  FFE   G+T F++
Sbjct: 786 QFYNLPKVRPFFEK--GVTLFSA 806


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,727
Number of Sequences: 5004
Number of extensions: 49465
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)