Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_G16
(742 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D84145-1|BAA19984.1| 190|Homo sapiens WS-3 protein. 118 2e-26
CR456851-1|CAG33132.1| 190|Homo sapiens DCTN6 protein. 118 2e-26
BC013175-1|AAH13175.1| 190|Homo sapiens dynactin 6 protein. 118 2e-26
BC004191-1|AAH04191.1| 182|Homo sapiens dynactin 5 (p25) protein. 31 5.7
AK027387-1|BAB55077.1| 182|Homo sapiens protein ( Homo sapiens ... 31 5.7
AF433663-1|AAP97314.1| 384|Homo sapiens unknown protein. 30 7.6
>D84145-1|BAA19984.1| 190|Homo sapiens WS-3 protein.
Length = 190
Score = 118 bits (285), Expect = 2e-26
Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 5/174 (2%)
Frame = -1
Query: 553 NIKILPGATVCEDCTLEGDITIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXYSTIIHKKS 374
++KI PGA VC + + GD+TIG TVIHP+ + II+
Sbjct: 8 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYP 67
Query: 373 DK----QENP-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVI 209
D E+P PKP+ IG +NVFEV C +++ +G++NV E +++VG V + SGC+I
Sbjct: 68 DNITPDTEDPEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCII 125
Query: 208 GAACTLTAPQILADNTVIWGSEHHVREALEKQPXXXXXXXXXSKVMPNYHRLRK 47
GA C L +++ +NTVI+G++ R E+ K++PNYH L+K
Sbjct: 126 GACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKK 179
>CR456851-1|CAG33132.1| 190|Homo sapiens DCTN6 protein.
Length = 190
Score = 118 bits (285), Expect = 2e-26
Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 5/174 (2%)
Frame = -1
Query: 553 NIKILPGATVCEDCTLEGDITIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXYSTIIHKKS 374
++KI PGA VC + + GD+TIG TVIHP+ + II+
Sbjct: 8 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYP 67
Query: 373 DK----QENP-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVI 209
D E+P PKP+ IG +NVFEV C +++ +G++NV E +++VG V + SGC+I
Sbjct: 68 DNITPDTEDPEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCII 125
Query: 208 GAACTLTAPQILADNTVIWGSEHHVREALEKQPXXXXXXXXXSKVMPNYHRLRK 47
GA C L +++ +NTVI+G++ R E+ K++PNYH L+K
Sbjct: 126 GACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKK 179
>BC013175-1|AAH13175.1| 190|Homo sapiens dynactin 6 protein.
Length = 190
Score = 118 bits (285), Expect = 2e-26
Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 5/174 (2%)
Frame = -1
Query: 553 NIKILPGATVCEDCTLEGDITIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXYSTIIHKKS 374
++KI PGA VC + + GD+TIG TVIHP+ + II+
Sbjct: 8 SVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYP 67
Query: 373 DK----QENP-PKPLFIGAHNVFEVACKLESIYGHVGESNVFECRSFVGEEVKVGSGCVI 209
D E+P PKP+ IG +NVFEV C +++ +G++NV E +++VG V + SGC+I
Sbjct: 68 DNITPDTEDPEPKPMIIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVGRNVILTSGCII 125
Query: 208 GAACTLTAPQILADNTVIWGSEHHVREALEKQPXXXXXXXXXSKVMPNYHRLRK 47
GA C L +++ +NTVI+G++ R E+ K++PNYH L+K
Sbjct: 126 GACCNLNTFEVIPENTVIYGADCLRRVQTERPQPQTLQLDFLMKILPNYHHLKK 179
>BC004191-1|AAH04191.1| 182|Homo sapiens dynactin 5 (p25) protein.
Length = 182
Score = 30.7 bits (66), Expect = 5.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 247 VGEEVKVGSGCVIGAACTLTAPQILADNTVI 155
+G V VG CVIG C L + DNTV+
Sbjct: 104 IGSYVHVGKNCVIGRRCVLKDCCKILDNTVL 134
>AK027387-1|BAB55077.1| 182|Homo sapiens protein ( Homo sapiens
cDNA FLJ14481 fis, clone MAMMA1002351, highly similar to
Mus musculus dynactin subunit p25 (p25) mRNA. ).
Length = 182
Score = 30.7 bits (66), Expect = 5.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 247 VGEEVKVGSGCVIGAACTLTAPQILADNTVI 155
+G V VG CVIG C L + DNTV+
Sbjct: 104 IGSYVHVGKNCVIGRRCVLKDCCKILDNTVL 134
>AF433663-1|AAP97314.1| 384|Homo sapiens unknown protein.
Length = 384
Score = 30.3 bits (65), Expect = 7.6
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 18/124 (14%)
Frame = -1
Query: 319 EVACKLESIYGHVG--ESNVFE-------CRSFVGEEVKVGSGCVIGAACTLTAPQILAD 167
++ CK+ES++ ++G F CRSF E I A T+ +
Sbjct: 104 QLVCKIESVHSNMGLPTPQTFRPWSLNSNCRSFTEENHMSACHHSISAQ---TSKHLFWA 160
Query: 166 NTVIWGSEHHVREALEKQPXXXXXX---------XXXSKVMPNYHRLRKPNVHKRQPSRQ 14
N +I SEH ++ A+ Q SK + + +L+ P+ H PS+
Sbjct: 161 NKLIQASEHSLQRAINMQLNNGSAGQPIRSPLREAIPSKALCSEEQLQIPDAHSAPPSKS 220
Query: 13 XQEP 2
QEP
Sbjct: 221 SQEP 224
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,381,379
Number of Sequences: 237096
Number of extensions: 1685047
Number of successful extensions: 3090
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3083
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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