Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G15
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.4  
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        21   9.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 499 IFFWITTPAIFLFLASIILKA 437
           +F WI T A+ +  A IIL+A
Sbjct: 521 LFLWIFTLAVLVGTAGIILQA 541


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 499 IFFWITTPAIFLFLASIILKA 437
           +F WI T A+ +  A IIL+A
Sbjct: 521 LFLWIFTLAVLVGTAGIILQA 541


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 499 IFFWITTPAIFLFLASIILKA 437
           +F WI T A+ +  A IIL+A
Sbjct: 516 LFLWIFTLAVVVGTAGIILQA 536


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/61 (21%), Positives = 24/61 (39%)
 Frame = +3

Query: 369 AEDKTQLTQDNPGESYLERPRPSALRIIDARKRKMAGVVIQKKMTFLFIMKLKCLNIIXY 548
           A D+ +    N  E      RP+ ++     + +   + I K   F F      LN++ +
Sbjct: 320 AIDEFKTPMRNDSERNRSPVRPATVQYDTCCQGRATAIYIDKVSRFFFPFSFLILNVVYW 379

Query: 549 S 551
           S
Sbjct: 380 S 380


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 499 IFFWITTPAIFLFLASIILKA 437
           IF WI T A  L    IIL+A
Sbjct: 549 IFLWIFTVACVLGTVLIILQA 569


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 147 IEIGFVRRRSEYKK 188
           ++I F  RRS+YKK
Sbjct: 25  VKIWFQNRRSKYKK 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,742
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)