Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_G13
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 32 0.094
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 31 0.29
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.50
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.66
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 28 1.5
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 28 1.5
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 28 2.0
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.7
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 27 3.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 4.7
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 6.2
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 6.2
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 8.2
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 32.3 bits (70), Expect = 0.094
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 760 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 602
I VE QPEDSK T+V +S +EK + + S D A + +++ +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 30.7 bits (66), Expect = 0.29
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 1/131 (0%)
Frame = -1
Query: 883 RYSPRDSDIAKPEXXXXXXXXXXXXEAKSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQ 707
+++ + KPE E K S+ P+ + + KVEEP+ + ++ + +
Sbjct: 419 KHNEEKVETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKE 478
Query: 706 ATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPK 527
TV + +E+ P A S VKK P+ E E P+A AP
Sbjct: 479 ETVTQPKREKTPVEKSFPKPASSPVTFSEDVKK---EPSEEKKLEVSDE--APKA--APL 531
Query: 526 LADNPVDEDKP 494
V+E +P
Sbjct: 532 AESKKVEEKEP 542
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.50
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = -1
Query: 859 IAKPEXXXXXXXXXXXXEAKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKE 680
I KP AK S D K + K + A+ PE SK V+ KE
Sbjct: 23 IEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKE 81
Query: 679 EKPSATDAEGSADSA 635
E S +++E S+ +
Sbjct: 82 ESSSESESESSSSES 96
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.66
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = -1
Query: 757 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 578
+VEE A+ S E S KPSA AE D I V I L +
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 577 AAAVPEI---KTPEAADAPKLADNPVDEDK 497
+ E+ KTP DAP +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = -1
Query: 790 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP---SATDAEGSADSAAIIPN 620
+ ++ +KS+ + V+ + P+ S + QA E P S T+ A A + +
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANK-QAKEMESKMSNSPTQKSKTEENNQAVRAILDAS 585
Query: 619 --MVKKIDL----APTVESDAAAVPEIKTP 548
M K+ DL PT ++++A+VP+I P
Sbjct: 586 ATMEKQYDLHRLPTPTSQTESASVPQIANP 615
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.3 bits (60), Expect = 1.5
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = -1
Query: 730 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKT 551
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 550 PEAADAPKLADNPVD 506
P AA AP A + VD
Sbjct: 83 P-AAVAPVEATSAVD 96
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 27.9 bits (59), Expect = 2.0
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -1
Query: 724 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEI-KTP 548
+K+E A +A EE S + A K + V SDA V + KT
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311
Query: 547 EAADAPKLADNPVDEDKPAD 488
E AD + +DE KPAD
Sbjct: 312 EDADEEPETEENLDEFKPAD 331
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 750 KNQLLSLKIQKLKYKLPSLKFQKKKNL 670
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 191 VGSGARVNVFAASSGRVSKTV 253
V SGARV ++ ASS V KT+
Sbjct: 57 VTSGARVQIYGASSRSVKKTI 77
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 4.7
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = -1
Query: 799 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS----ADSAA 632
SS DA AKS + EPA +P + + ++T + EK + TD + A
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTA 956
Query: 631 IIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDE 503
+ + V + ++ +V + P++ PK + D+
Sbjct: 957 DVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDD 999
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 697 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAVPEIKTPEA 542
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 784 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 638
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = -1
Query: 778 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 641
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,350
Number of Sequences: 5004
Number of extensions: 42409
Number of successful extensions: 145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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