Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G11
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006665-4|AAF39906.1|  211|Caenorhabditis elegans Hypothetical ...   348   3e-96
AF003148-4|AAR25646.1|  301|Caenorhabditis elegans Hypothetical ...    30   2.5  
AF003148-2|AAR25645.1|  400|Caenorhabditis elegans Hypothetical ...    30   2.5  
AF003148-1|AAR25644.1|  432|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical p...    29   3.3  

>AC006665-4|AAF39906.1|  211|Caenorhabditis elegans Hypothetical
           protein H27M09.2 protein.
          Length = 211

 Score =  348 bits (856), Expect = 3e-96
 Identities = 160/208 (76%), Positives = 186/208 (89%)
 Frame = -2

Query: 645 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 466
           DD+ ETY+LWRIRKTV+Q+ HDRGYLV QDELDQ LE FK Q+GD+PSEK+PARSDL +L
Sbjct: 3   DDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTIL 62

Query: 465 VAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDM 286
           VAHNDDP DQMFVFFP++AKIGIKTIK  C +MQE+NI RAI+VVQ GM+PSAKQS+ DM
Sbjct: 63  VAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDM 122

Query: 285 APKYILEQFLESELLINITEHELVPEHIVLTPDEKQELLARYKLKENMLMRIQAGDPVAR 106
           APKY+LE FLE+EL++NITEHELVPEH+V+T +EK ELLARYKLK++ L RIQ  DPVAR
Sbjct: 123 APKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVAR 182

Query: 105 YFGLKRGQVVKIIRSSETAGRYISYRLV 22
           YFGL+RGQVVKIIR SETAGRYI+YRLV
Sbjct: 183 YFGLRRGQVVKIIRPSETAGRYITYRLV 210


>AF003148-4|AAR25646.1|  301|Caenorhabditis elegans Hypothetical
           protein F32B5.6d protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = -2

Query: 363 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 193
           E  I + ++ +QA M PS  + L+ ++ KY   IL+  +   L+  I  +   P+ +V  
Sbjct: 159 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 218

Query: 192 PDEKQELLARYKLKENM 142
             E Q++    +  EN+
Sbjct: 219 THELQQMAHEIRENENI 235


>AF003148-2|AAR25645.1|  400|Caenorhabditis elegans Hypothetical
           protein F32B5.6b protein.
          Length = 400

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = -2

Query: 363 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 193
           E  I + ++ +QA M PS  + L+ ++ KY   IL+  +   L+  I  +   P+ +V  
Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349

Query: 192 PDEKQELLARYKLKENM 142
             E Q++    +  EN+
Sbjct: 350 THELQQMAHEIRENENI 366


>AF003148-1|AAR25644.1|  432|Caenorhabditis elegans Hypothetical
           protein F32B5.6a protein.
          Length = 432

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = -2

Query: 363 EENIHRAIVVVQAGMSPSAKQSLVDMAPKY---ILEQFLESELLINITEHELVPEHIVLT 193
           E  I + ++ +QA M PS  + L+ ++ KY   IL+  +   L+  I  +   P+ +V  
Sbjct: 290 ERFICQKVIEIQADMDPSFAKKLLLVSEKYNLEILKMVINGFLVDQIIGNSNPPKELVNI 349

Query: 192 PDEKQELLARYKLKENM 142
             E Q++    +  EN+
Sbjct: 350 THELQQMAHEIRENENI 366


>Z81540-12|CAB04396.2|  149|Caenorhabditis elegans Hypothetical
           protein F46B3.15 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 62  DLMIFTTCPRLSPKYLATGSPACI 133
           DL +FTTCP++S   +  G   C+
Sbjct: 85  DLCVFTTCPKMSSCIVVDGKAKCV 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,806,943
Number of Sequences: 27780
Number of extensions: 431198
Number of successful extensions: 1122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)