Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G11
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +2

Query: 38  MYRPAVSDDLMIFTTCPRLSPKYLATGSPACILINMFSFSLYLAKSSCFSSGVSTICSG 214
           M+   V ++L+   T  R++  ++   SPA I++   S +  +  ++  S+ +  +C+G
Sbjct: 1   MFTENVVEELLSPLTLNRIT--HILANSPAIIILGQDSKAKAIVVNTLISNDILPVCNG 57


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 530 NCSKVWSNSSCVTKYPRSWHNC 595
           +C+  W+  +CV  Y R   +C
Sbjct: 100 SCNNYWNTKNCVNPYDRDSLSC 121


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/54 (22%), Positives = 29/54 (53%)
 Frame = +2

Query: 53  VSDDLMIFTTCPRLSPKYLATGSPACILINMFSFSLYLAKSSCFSSGVSTICSG 214
           V ++L+   T  R++  ++   SPA I++   S +  +  ++  S+ +  +C+G
Sbjct: 44  VVEELLSPLTLNRIT--HILANSPAIIILGQDSKAKAIVVNTLISNDILPVCNG 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,954
Number of Sequences: 438
Number of extensions: 6008
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)