Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G08
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    31   0.53 
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922...    27   8.7  

>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 86  LCFPFITLSIMKFAIT---HAFEFIYCILICF*TVIGNISVYVKIYPYI 223
           L  PF +LSI KF I+    A  F Y I I F   + N+    K+ P++
Sbjct: 358 LAIPFFSLSIRKFLISIAVFALVFFYMIPIAFVQSLANLEGIEKVAPFL 406


>04_04_0792 -
           28091597-28091675,28091853-28091908,28092151-28092211,
           28092290-28092363,28092865-28092945,28093127-28093201,
           28093276-28093395,28093486-28093566,28093644-28093712,
           28094057-28094128,28094220-28094362,28094452-28094566,
           28094651-28094774,28095124-28095476,28096035-28096374,
           28096914-28097124,28097209-28097482,28097570-28097788,
           28097868-28098004,28098117-28098375
          Length = 980

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 243 KFLKPHHIVYICHKSQKYRNVNCLRINK-PSQSCCLI 350
           K L+P H+V  C +S  Y     L++++  SQSC +I
Sbjct: 725 KVLEPCHLVISCQRSPIYIGGRYLKLSRNVSQSCWII 761


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,062,414
Number of Sequences: 37544
Number of extensions: 226580
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)