Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G07
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    27   1.8  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.8  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   3.2  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   3.2  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.6  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    25   9.9  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.9  

>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -3

Query: 471 GSGEFHVYRHLRRKEYARQR---FIQEKSEKEKLDEEYHKKIED 349
           G+ E  V +  RR ++ ++R   ++QEK +K++  E   +K+E+
Sbjct: 17  GTSELPVKKAFRRGDWEKEREKKYLQEKQQKDEQRELKKRKLEE 60


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 432 KEYARQRFIQEKSEKEKLDEEYHKKIED 349
           K    ++ IQEKS  +K+ +EY +K+ +
Sbjct: 390 KRLKEEKIIQEKSRVDKMIDEYRQKLSE 417


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 447 RHLRRKEYARQRFIQEKSEKEKLDEEYHKK 358
           R  R +E   +R ++E+  +EKLD+E  ++
Sbjct: 689 REQRLREEEEKRILEERKRREKLDKEEEER 718


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 432 KEYARQRFIQEKSEKEKLDEE 370
           +E+ARQ+ +  K E+E+ DEE
Sbjct: 383 EEFARQQLLSRKEEEEEEDEE 403


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 77  LLFCSMFSDLFLLLCSNFDEPISSFFCLSVPSQSWM 184
           LLF   F +  +  C  F  P++ F   ++ +Q W+
Sbjct: 848 LLFADQFGNYVVQTCLKFGAPMNDFVFEAILNQFWV 883


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 486 SSAGAGSGEFHVYRHLRRKEYARQRFIQEKSEKEKLDEE 370
           +SA AGS       H +R + + +  IQ+ S +  LDEE
Sbjct: 257 ASANAGSSNEISIPHYQRHKKSHKGAIQDSSIQSYLDEE 295


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +3

Query: 105 YFYYYVQILMN--LYPHSSAYQFHHNP 179
           Y+YYY+ I ++   +P      FH NP
Sbjct: 68  YYYYYLLICLSPHFFPIKRIRPFHENP 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,569
Number of Sequences: 5004
Number of extensions: 30941
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)