Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G07
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0024 + 438288-438542,439020-439069,440096-440351                 37   0.017
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476     30   1.9  
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906...    28   7.7  
02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162           28   7.7  

>09_01_0024 + 438288-438542,439020-439069,440096-440351
          Length = 186

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -3

Query: 504 VRNVMGSSAGAGSGEFHVYRHLRRKEYARQRFIQEKSEKEKL---DEEYHKK 358
           V N  GSSAG+GSG+FH   HL    Y     +  + E+++L   D +Y K+
Sbjct: 68  VSNTSGSSAGSGSGDFH-QPHLLMGAYNFHELVGSRREQDRLARMDADYQKR 118


>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
          Length = 676

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 468 SGEFHVYRHLRRKEYARQRFIQEKSEKEKLDEEYH 364
           SG   V RHLRR+E   +R  + +  KEKL   +H
Sbjct: 533 SGASRVSRHLRRQERLERRVERMRRFKEKLGTVFH 567


>02_03_0313 -
           17590109-17590148,17590254-17590382,17590479-17590612,
           17590779-17590841,17590920-17591070,17593372-17593424,
           17593483-17593629,17593839-17594163,17594240-17594409,
           17595252-17595453,17596065-17596273,17597051-17597260,
           17597360-17597489,17599664-17600402,17600411-17600531
          Length = 940

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 462 EFHVYRHLRRKEYARQRFIQE-KSEKEKLDEEYHKKIE 352
           E H+   L      R+  +QE ++ KEKLD+EYH+  E
Sbjct: 536 EKHLEESLGPLSKERESLLQEHEALKEKLDQEYHQLAE 573


>02_01_0555 + 4086434-4087157,4087257-4087943,4088495-4089162
          Length = 692

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 489 GSSAGAGSGEFHVYRHLRRKEYARQRFIQEKSEKEKLDE 373
           G+SA  G G     R  RR E+ R  F+QE  ++ ++++
Sbjct: 343 GTSASGGGGGAAAKRGGRRDEHGRLVFVQESRKRFEIED 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,717,035
Number of Sequences: 37544
Number of extensions: 172936
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)