Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G04
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    26   2.9  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   6.7  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   6.7  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   8.8  

>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 192 NAGSSYGTWLFSSPTYGD 245
           N G+S GT LFSS T+G+
Sbjct: 19  NTGTSAGTGLFSSNTFGN 36


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 186 EGNAGSSYGTWLFSS--PTYGDIPFSSSSYIAAVVALSFHTPLSIV*Y 323
           EG   S  G +L +   P Y  I   +S  I A+V L  HT + I+ Y
Sbjct: 307 EGQDMSVIGNFLENHDLPRYTSITNDTSQDIGAIVFLLLHTGIPIIYY 354


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -2

Query: 304 GVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALPSNDRISYLFKYYWNCGVKATF 125
           GV +DS       +++ K       +  ++V     AL + DR   L+KY   CG+K+ F
Sbjct: 286 GVRQDSGCAEEYIEKVVKHYKSIGVDPSTKVIVHSDAL-NVDRCIELYKYCEKCGIKSAF 344


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 268 YDELEKGMSPYVGELKSQVPYELP 197
           Y  L +GM PYV     +  ++LP
Sbjct: 342 YTVLSRGMKPYVRSFYERTAFQLP 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,073
Number of Sequences: 5004
Number of extensions: 44952
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)