Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G04
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098999-5|AAC68725.1|  102|Caenorhabditis elegans Hypothetical ...    33   0.16 
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    30   0.85 
Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    29   1.5  
AC084196-4|AAP40511.1|  162|Caenorhabditis elegans Hypothetical ...    29   1.5  
AC084196-3|AAK39621.1|  285|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z73978-1|CAA98294.1|  236|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    28   4.5  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    28   4.5  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    28   4.5  
Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    27   6.0  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    27   6.0  
Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AF098999-5|AAC68725.1|  102|Caenorhabditis elegans Hypothetical
           protein W04C9.2 protein.
          Length = 102

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = -2

Query: 361 KFGVKSALLGSAVYYTIDKGVWK-DSATTAAIYDELEKGMSPYVGELKSQVPYELPALPS 185
           K G+K  L+  AV  +ID  +W  ++   + +Y +L+K + P       Q       LP+
Sbjct: 9   KLGIKVGLVAGAVKLSIDNDIWSTNNVKGSELYQKLKKYILPGTVVFPEQ-------LPT 61

Query: 184 NDRISYLFKYYWNCGVKATFRFLVELPTHTSNAA 83
            + +       WN  V + F  +  +P+  +  A
Sbjct: 62  VEDVQLKAGGKWNSAVDSVFTTIENVPSSVNTVA 95


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 192 YLLMTGYHICSSTTGIAVSKLHLDF*SNCLPILVMQLSRHTTL--FHHLWKLQ 40
           YL+  GYH  + T GI VS     F S  L +LV Q  R  TL  F   WK++
Sbjct: 270 YLVPMGYHNQAITNGIFVSVSMHGFLSTVLLLLVHQPYRMATLRIFKCRWKVK 322


>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 252 KECHHMSGN*RAKFHTNYQHYLLMTGYHI--CSSTTGIAVSKLHLDF*SN-CLP 100
           +EC  +SG    K+ TNY + LL+ G +   C  T    +S   L F S  C+P
Sbjct: 110 QECERISGKSETKYETNYCYVLLIPGKNSSHCHETKSGDLSPTTLFFRSAVCMP 163


>AC084196-4|AAP40511.1|  162|Caenorhabditis elegans Hypothetical
           protein Y55D5A.1b protein.
          Length = 162

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 316 TIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALP 188
           T+    W+   T   ++   ++ +  Y+  LKSQ P  +P  P
Sbjct: 52  TLQNATWQTMNTVLRVFSLTDRQVMGYLRHLKSQTPSAMPIFP 94


>AC084196-3|AAK39621.1|  285|Caenorhabditis elegans Hypothetical
           protein Y55D5A.1a protein.
          Length = 285

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 316 TIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALP 188
           T+    W+   T   ++   ++ +  Y+  LKSQ P  +P  P
Sbjct: 175 TLQNATWQTMNTVLRVFSLTDRQVMGYLRHLKSQTPSAMPIFP 217


>Z73978-1|CAA98294.1|  236|Caenorhabditis elegans Hypothetical
           protein ZC302.3 protein.
          Length = 236

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -2

Query: 349 KSALLGSAVYYTIDKGVWKDSATTAAIYDELEKGMSPYVGELKSQVPYELPALPSNDRIS 170
           KS L G     T++  V K+   T ++ D ++   + ++G+ +     EL  +P    I 
Sbjct: 71  KSMLDGLKSQCTVNTVVLKNMLITKSVEDSVKLNAARFLGKSEK----ELMDIPE---IK 123

Query: 169 YLFKYYWNC 143
            +F+ YWNC
Sbjct: 124 QMFQQYWNC 132


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 91  NAAFKTYDFISSSLETPEPTDXKKRN 14
           N+AF + D    SL TP PT    RN
Sbjct: 141 NSAFSSNDSCRDSLNTPSPTQVSPRN 166


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 91  NAAFKTYDFISSSLETPEPTDXKKRN 14
           N+AF + D    SL TP PT    RN
Sbjct: 158 NSAFSSNDSCRDSLNTPSPTQVSPRN 183


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 91  NAAFKTYDFISSSLETPEPTDXKKRN 14
           N+AF + D    SL TP PT    RN
Sbjct: 270 NSAFSSNDSCRDSLNTPSPTQVSPRN 295


>Z70036-1|CAA93875.1|  522|Caenorhabditis elegans Hypothetical
           protein T01B4.1 protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 377 LLHDVKVWREICVTWIRSVLHNRQRCVER*CY 282
           +L  +K + E+CV W + +  N Q+C+++ C+
Sbjct: 168 MLFVLKNFGELCVKWAKKIQFNVQQCLKK-CF 198


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
            protein.
          Length = 1668

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 139  VKATFRFLVELPTHTSNAAFKTYDFISSSLETPEPTDXKKRN 14
            ++++ + +++  T T +AAFK   F  SS +TP+P     R+
Sbjct: 1535 LESSRKSMMKRKTETLDAAFKKRFFALSSEQTPDPAGFSARD 1576


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
            protein 2 protein.
          Length = 1668

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -2

Query: 139  VKATFRFLVELPTHTSNAAFKTYDFISSSLETPEPTDXKKRN 14
            ++++ + +++  T T +AAFK   F  SS +TP+P     R+
Sbjct: 1535 LESSRKSMMKRKTETLDAAFKKRFFALSSEQTPDPAGFSARD 1576


>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 78  LKAALLVWVGNSTKNLNVALTPQFQ*YLNKYDILSLEGN 194
           LK  L   +G   ++LN+A+  +F  Y N     SLEG+
Sbjct: 88  LKGPLETPIGKGHRSLNLAVRKEFSLYANVRPCRSLEGH 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,044
Number of Sequences: 27780
Number of extensions: 242041
Number of successful extensions: 622
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)