Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G03
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67954-1|AAB52605.2|  826|Caenorhabditis elegans Hypothetical pr...    47   5e-08
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    31   0.82 

>U67954-1|AAB52605.2|  826|Caenorhabditis elegans Hypothetical
           protein F41D9.1 protein.
          Length = 826

 Score = 47.2 bits (107), Expect(2) = 5e-08
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = -2

Query: 531 KDTXNQPLKEGVRDMLVKHHLFSWDL 454
           K    +PLK+GV DML+KHHLFSWDL
Sbjct: 801 KQNGEEPLKQGVTDMLIKHHLFSWDL 826



 Score = 27.1 bits (57), Expect(2) = 5e-08
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 597 CELRILSQFGFXLNPDWEL 541
           C+LR+LSQF F L+  +E+
Sbjct: 749 CDLRLLSQFSFNLSMSFEI 767


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 370 NMLQLYIFRKVLIS*YHQFTIDGAVSTYV*VNYIIYIRLSKSH 242
           N++ L   R+ L++ YH   +D  +   + +N + YIR S+SH
Sbjct: 97  NLMLLDAHREDLMANYHTSYLDPTIDEVIRINKVDYIRKSQSH 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,080,359
Number of Sequences: 27780
Number of extensions: 231389
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)