Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_G02
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0998 - 8414492-8415175                                           33   0.14 
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526...    29   1.8  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    29   2.4  
12_02_0223 + 15868889-15869182                                         28   4.1  
03_05_0809 - 27858389-27858604,27858630-27858659                       28   5.4  
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864...    28   5.4  
05_03_0245 + 10890555-10890962                                         27   9.5  
05_03_0244 + 10857139-10857516                                         27   9.5  
02_04_0413 + 22681957-22682035,22682253-22682788                       27   9.5  

>07_01_0998 - 8414492-8415175
          Length = 227

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 169 CCNRCCTGCSQLRK-CCNRCCMGC 237
           CC  C  GC +    CC+RCC GC
Sbjct: 2   CCCCCECGCYECYDACCDRCCCGC 25


>04_03_0941 -
           20950190-20951088,20952436-20952478,20952580-20952606,
           20953189-20953301,20953872-20954715,20955740-20955790,
           20956026-20956126,20956205-20956244,20956360-20957124
          Length = 960

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = +1

Query: 142 CRECSQLRKCCNRCCTGCSQLRKCCNRCCMGCSQLR 249
           C  C  +R CC+ C     ++      CC     LR
Sbjct: 54  CTMCGSVRYCCSDCLISDCEVHSSSGECCFFVKHLR 89


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 139 CCRECSQLRKCCNRCCTGCSQLRKCCNRCCMGCSQL 246
           C R+C +LR C    C      R+CC   C  C ++
Sbjct: 412 CERKCQRLRNCGRHACR-----RRCCEGDCAPCPEV 442


>12_02_0223 + 15868889-15869182
          Length = 97

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +1

Query: 151 CSQLRKCCNRCCTGCSQLRKCCNRCCMGCS 240
           CS     CN  C     + K C   C GCS
Sbjct: 40  CSNCDDICNASCVNSDTIAKLCAPQCDGCS 69


>03_05_0809 - 27858389-27858604,27858630-27858659
          Length = 81

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +1

Query: 151 CSQLRKCCNRCCTGCSQLRKCCNRC--CMGCSQ 243
           CSQ  + CN  C G      C   C  C GC Q
Sbjct: 31  CSQCDQMCNSSCEGAGS-EPCSYACGSCQGCMQ 62


>01_06_0801 -
           32085110-32085274,32086318-32086365,32086441-32086483,
           32086588-32086651,32086740-32086792,32086899-32086937,
           32087031-32087113,32087200-32087280
          Length = 191

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 142 CRECSQ--LRKCCNRCCTGCSQLRKCCNRCC 228
           C++C +  +R+  +  CT CS+    C +CC
Sbjct: 68  CQKCGKRNVRQAYHNVCTACSKDLGICAKCC 98


>05_03_0245 + 10890555-10890962
          Length = 135

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +1

Query: 139 CCRECSQLRKCCNRCCTGCSQLRKCCNRCCMGCS 240
           C + C   R CC   C      R  C  C   CS
Sbjct: 90  CNKACKHGRSCCGGRCVDLLSDRDNCGSCSNQCS 123


>05_03_0244 + 10857139-10857516
          Length = 125

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +1

Query: 139 CCRECSQLRKCCNRCCTGCSQLRKCCNRCCMGCS 240
           C + C   R CC   C      R  C  C   CS
Sbjct: 81  CNKACKHGRSCCGGRCVDLLSDRDNCGSCSNQCS 114


>02_04_0413 + 22681957-22682035,22682253-22682788
          Length = 204

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 139 CCRECSQLRKCCNRCCTGCSQLRKCCNRCCMGCSQ 243
           C  EC     C +  C+      K CN CC  C +
Sbjct: 164 CQHECPPTPPCEHPPCSESGCCDKGCNSCCNRCGE 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,425,235
Number of Sequences: 37544
Number of extensions: 102330
Number of successful extensions: 336
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)