Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_F24
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    28   1.1  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   3.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   4.5  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.5  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   6.0  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    26   6.0  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   7.9  

>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -1

Query: 494 RDELRAGRITAHPERTRLGEDGEMDGSPEERSENRHRRLRETFRETAQGTGTREELEQR 318
           R   RAG  + H E     ED E     +E    R R+  +  R +  G   R +L ++
Sbjct: 364 RSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDLRLSRMGAEKRAKLAEK 422


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 24/129 (18%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
 Frame = -2

Query: 499  VLGMNFELEESLLTQSGPVSERMEKWTEAQRKGQKIDIDVYGKPSEKQLRELEHVRSLSK 320
            + G   +L+ES+  +S  +   + +    +++   +  ++  +  E   +++E ++SLS 
Sbjct: 732  ITGETTDLQESMHHKSRMLELVVLELHTLEQQANDLKSELSSEMDELDPKDVEALKSLSG 791

Query: 319  ELQDNLHELETAVRIADVENQAMNPTAPMLDYS-EDHEFVSANRLNNCYGDEDLVDAKE- 146
            ++++  HE +  ++    E   +      L+Y    + ++  N L    G ++ +D  E 
Sbjct: 792  QIENLSHEFDAIIK----ERAHIEARKTALEYELNTNLYLRRNPLKAEIGSDNRIDESEL 847

Query: 145  -EEKRRLTK 122
               KR L K
Sbjct: 848  NSVKRSLLK 856


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 511 QTRAVLGMNFELEESLLTQSGPVSERMEKWTEAQRKG 401
           Q +A L  N+E E   LTQ   + E    W   + +G
Sbjct: 179 QEKASLQTNYEFELQKLTQKNSILENNNTWLSRELQG 215



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -2

Query: 364  EKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLN 185
            +  LREL       KE+ DN +EL        ++N+ +N     L  + D   +  NRL 
Sbjct: 1196 DNDLRELVSYLRHEKEIMDNKYELTI------LDNRGLNQQVKSLQSTVDSLQLELNRLQ 1249

Query: 184  NCYGDEDLVD 155
            +     D  D
Sbjct: 1250 SLPVSNDQTD 1259


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -2

Query: 322 KELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKEE 143
           +EL+++  +L+  VR+   EN  +     + +  +D        LN       L + ++ 
Sbjct: 345 QELRNSFQQLQELVRVVLHENGRVTRLVDVSNTLDD--------LNKDMRFHKLSEVRQH 396

Query: 142 EK--RRLTKDGRISLKASRVIEKVV 74
               +  TKD  ++  ASRVIEK+V
Sbjct: 397 VNTLKEATKDDELAALASRVIEKIV 421


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 178 YGDEDLVDAKEEEKRR 131
           YGDED ++ ++EE+RR
Sbjct: 764 YGDEDELEQEQEERRR 779


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 385 DVYGKPSEKQLRELEHVRSLSKELQDNLHELE 290
           D Y  PS    R+  +++ L+K LQD+L ELE
Sbjct: 5   DAYHWPSRTPSRKGSNIK-LNKTLQDHLDELE 35


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 379 YGKPSEKQLRELEHVRSLSKELQDNLHEL 293
           +  P+E +   +EH  +L K+++D  H L
Sbjct: 589 FENPNEGEKEIVEHYETLHKKIEDKFHTL 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,734
Number of Sequences: 5004
Number of extensions: 50673
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)