Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_F24
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0700 - 18836757-18837329 36 0.031
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 31 0.89
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 31 1.2
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 29 2.7
05_05_0299 - 23930657-23932627 29 2.7
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272 29 4.7
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 29 4.7
03_06_0199 + 32310272-32311432 29 4.7
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 28 6.2
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 8.3
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 8.3
01_05_0414 + 21938579-21938818 28 8.3
01_02_0053 + 10673264-10674510,10674552-10674576,10674802-106748... 28 8.3
>04_03_0700 - 18836757-18837329
Length = 190
Score = 35.9 bits (79), Expect = 0.031
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = -1
Query: 440 GEDGEMDGSPEERSENRHRRLRETFRETAQGTGTREELEQRAAG 309
GEDG G PE R E+ HR+ R TAQ G R + AG
Sbjct: 137 GEDGRQPGEPEARGESGHRQ----GRSTAQAVGDRRHIAWSVAG 176
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 672 CKTTASTYLIRLTIGNLNEFGRPMSIRRSEAGSRRVT 562
C+TT S L++L+ N +E G S+ E G RVT
Sbjct: 323 CRTTGSIALLKLSRPNADELGYADSVSVEEIGGARVT 359
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = -2
Query: 358 QLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNC 179
QLR+ V+ + + L+D HE+ +++ ++ ++ + P L Y F+ N+ N C
Sbjct: 365 QLRQPNQVKKIFEFLKDGFHEVSSSLDLSFDDDSVADEKIPFLAYLA--SFLKENKYNPC 422
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 29.5 bits (63), Expect = 2.7
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Frame = -2
Query: 409 RKGQKIDIDVYGKPSEKQLRELEHVRSLSKELQDNLHELETAVR-IADVENQA-----MN 248
RK +K +D Q REL V+ LS EL++++ ELE + R +A ++ Q MN
Sbjct: 189 RKHEKY-LDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQTGGGSLMN 247
Query: 247 PTAPMLDYSEDHEFVSANRLNN-CYGDEDLVDAKEEEK 137
+AP + + VS ++ ++ G DL DA EE K
Sbjct: 248 TSAP----NGVNGSVSTDKSSDKGMGWRDLKDAVEEAK 281
>05_05_0299 - 23930657-23932627
Length = 656
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -1
Query: 476 GRITAHPERTRLGEDGEMDGSPEE-RSENRHRRLRE----TFRETAQG 348
G ++ PE+ E G+ DG + RSE R RR RE T R+ A G
Sbjct: 599 GPASSEPEKELPNEQGDADGKAKSTRSERRKRRRRELKMTTERQAAYG 646
>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
Length = 786
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 468 HCSPRADPSRRGWRNGRKPRGKVR 397
H R+ PS+RG RNG + RG+ R
Sbjct: 701 HTLGRSTPSKRGGRNGSQSRGRRR 724
>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -2
Query: 295 LETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKEEEKRRL-TKD 119
+E + +EN + + D S+ + + + C +EDL EE +R + +D
Sbjct: 1905 IEPQLESVSLENGPVEEAGDLADVSKQTDSNTEDEKLLCTEEEDLSKEAEESERHVDVRD 1964
Query: 118 GRISLKASRVIE 83
G++ ++A E
Sbjct: 1965 GQVDIQAEDAAE 1976
>03_06_0199 + 32310272-32311432
Length = 386
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 293 RNRCP-HRRRGEPGDEPDSTHAGLLRRPRIR 204
R RCP HRR P GLLRRPR R
Sbjct: 117 RVRCPCHRRFAHPRPARRRLRQGLLRRPRQR 147
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = -1
Query: 464 AHPERTRLGED-----GEMDGSPEERSENRHRRLRETFRETAQGTGTREE 330
A P T L +D GE+DG EER + R R + T A+ + E
Sbjct: 776 AQPPSTNLMDDLSSIFGEVDGESEERRKARLERHQRTMERAAKALAEKNE 825
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -2
Query: 439 ERMEKWTEAQRKGQKIDIDVYGKPSEKQLRELEHVRSLSKELQDNLHELE 290
E EK E +R+ + + +G+ E+Q RELE R +EL+ EL+
Sbjct: 72 EVKEKQLEEERQNHTLTVQRHGEELERQSRELERQR---EELERQGRELK 118
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -2
Query: 367 SEKQLRELE-HVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANR 191
SE ++LE + SLS+E +D EL + ++E++ TA Y E + ++
Sbjct: 987 SESISKKLEASISSLSREKEDMGIELTDV--LLEMESERSTWTAKEKAYLEAKQKLNICN 1044
Query: 190 LNNCYGDEDLV 158
NNC EDL+
Sbjct: 1045 KNNCKLSEDLI 1055
>01_05_0414 + 21938579-21938818
Length = 79
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 440 GEDGE-MDGSPEERSENRHRRLRETFRETAQGTGTREE 330
G DG+ +DG S R RRL TF +T+ G REE
Sbjct: 6 GSDGDDVDG---RSSRGRRRRLLGTFADTSFSAGGREE 40
>01_02_0053 +
10673264-10674510,10674552-10674576,10674802-10674886,
10675074-10675084
Length = 455
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 410 EERSENRHRRLRETFRETAQGTGTREELEQ 321
++R E +RL+E +R GTG +E+E+
Sbjct: 369 KKREELEKQRLQEAYRGAKVGTGIEDEMEE 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,828,691
Number of Sequences: 37544
Number of extensions: 334229
Number of successful extensions: 1208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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