Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_F21
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    98   1e-21
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   6.9  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   9.1  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 49/90 (54%), Positives = 57/90 (63%)
 Frame = -1

Query: 450 VILANSSIDITXHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFF 271
           VIL+NS +DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQF+
Sbjct: 363 VILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQFW 421

Query: 270 TIFIGVNITFFPQHFLGLAGIPRRYSDYPD 181
            +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 422 ILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451



 Score = 35.5 bits (78), Expect = 0.006
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = -2

Query: 620 VDTRAYLLQATISIAVPTGSKIF 552
           VDTRAY   AT+ IA+PTG KIF
Sbjct: 305 VDTRAYFSAATMVIAIPTGIKIF 327


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 316 YRPFIKFLYTKNSIFYXIYWSKYNIFSTTFFRFSWNTSTIFRL 188
           +RPF KFL  K +I +  YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVK-AIIFASYWQQTVLSITNWLGLLNGTGWIYSL 242


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 292 YTKNSIFYXIYWSKYNIFSTTFFR 221
           YT  S F    W  Y+IF + FF+
Sbjct: 256 YTAGSWFMLFIWIVYSIFLSIFFK 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,661
Number of Sequences: 5004
Number of extensions: 30020
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)