Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_F19
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 82 6e-16
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 80 2e-15
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 75 8e-14
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 74 1e-13
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 60 3e-09
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 38 0.009
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 29 3.1
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674... 29 5.4
08_01_0535 - 4638954-4639127,4639894-4639944,4640287-4640352,464... 28 9.5
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 28 9.5
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 28 9.5
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 81.8 bits (193), Expect = 6e-16
Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -2
Query: 766 NPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE 587
NP Y+G W P IDNP++ D +Y D + +G++LWQVKSGT+FD+FLITDDP AK
Sbjct: 293 NPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKT 352
Query: 586 -RGEVIKKRQEGEK 548
E K ++ EK
Sbjct: 353 FAEETWGKHKDAEK 366
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 80.2 bits (189), Expect = 2e-15
Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = -2
Query: 766 NPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE 587
NP YKG W P I NP+Y D +Y D + +G++LWQVKSGT+FD+ LITDDP AK+
Sbjct: 300 NPNYKGKWKAPLIPNPDYKDDPYIYAFDSLNHIGIELWQVKSGTLFDNILITDDPEYAKK 359
Query: 586 -RGEVIKKRQEGEK 548
E K ++ EK
Sbjct: 360 FAEETWAKHKDAEK 373
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 74.5 bits (175), Expect = 8e-14
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = -2
Query: 766 NPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAKE 587
NP YKG W P IDNPE+ D +LY + VG+++WQVK+G++FD+ LI DDP A+
Sbjct: 291 NPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARS 350
Query: 586 -RGEVIKKRQEGEKKMKSE 533
EV +E EK+ E
Sbjct: 351 VVDEVRAANKEAEKEAFEE 369
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = -2
Query: 766 NPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPA-AAK 590
NP YKG W P IDNPE+ D +LY + +G+++WQVK+G++FD+ LI DDP A K
Sbjct: 291 NPNYKGKWKIPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEYARK 350
Query: 589 ERGEVIKKRQEGEKKMKSE 533
E +E EK+ E
Sbjct: 351 AAEETWGANREAEKEAFEE 369
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 59.7 bits (138), Expect = 3e-09
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = -2
Query: 769 DNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAAK 590
DNP YKG W EI NPEY + + D I A+G+++W ++ G +FD+ LI DD A
Sbjct: 332 DNPNYKGIWKPQEIPNPEYF-ELDKPDSDPIAAIGIEIWTMQDGILFDNILIADDEKVAT 390
Query: 589 ERGEVI-KKRQEGEK-KMKSEQ 530
E K + E EK K K+E+
Sbjct: 391 SILEKSWKPKYEVEKEKEKAEE 412
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -2
Query: 652 QVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 548
+VKSGT+FD+ LITDDP AK+ E K ++ EK
Sbjct: 37 RVKSGTLFDNILITDDPEYAKKFAEETWAKHKDAEK 72
>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
Length = 528
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 280 F*HCACVWLEFYRFVGTCCV*VNMCPLFRTDVRVDGDYA 164
F +CA L YR G+ + N+C +F T + V+G YA
Sbjct: 388 FMYCAIPALFLYRTYGSMSIMWNICLMFITGMFVNGPYA 426
>04_04_0867 +
28865857-28866657,28866778-28867113,28867248-28867451,
28867567-28867746
Length = 506
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 167 VIPIYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTNDNSIG 301
++ +T++S K RT L TC Y N +LKTN + G
Sbjct: 52 LLEYHTELSRKYRTFRMLTPTCNYVYTVEPANVEHILKTNFANYG 96
>08_01_0535 -
4638954-4639127,4639894-4639944,4640287-4640352,
4640492-4640557,4640701-4640892,4641282-4641780,
4642009-4642364
Length = 467
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 151 YINSERNPHLHGHQYETTDTYLLTHNMSLRIGKIRAKHTH 270
Y++S RN H H + +T L N S G + +H H
Sbjct: 127 YMSSSRNDHHTNHHHHQINTPSLMSNSSSNNGVMLQEHQH 166
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 209 HIYLHTTCPYESVKFEPNTRTVL 277
H +H T PY+++ F+P RT+L
Sbjct: 479 HANVHGTLPYDNLHFDPVLRTLL 501
>02_05_0602 +
30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 613 TDDPAAAKERGEVIKKRQEGEKKMK 539
+DDP AA++ GEV+K ++ K +K
Sbjct: 496 SDDPIAAQKAGEVLKNLEKCSKNIK 520
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,232,243
Number of Sequences: 37544
Number of extensions: 345109
Number of successful extensions: 1129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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