Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_F17
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    32   0.090
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    30   0.28 
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    28   1.5  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   4.5  

>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = -3

Query: 593 CSMEQMINIR--DQQEHLARLHFRLCADVDKPTEDNFENSASRDKMEQLVKSLEQLSNSI 420
           C++ +M  +   ++++++ R   +   ++D+P E   ++    DK E   KSLE++S S+
Sbjct: 3   CNLAKMYEVEPSEKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEISQSV 62


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 421 IEFDNCSKLLTSCSILSL-----DAEFSKLSSVGLSTSAHKRKCNLAKCSC 558
           +EF  CS L +S  ILS      + E  KL   G+STSA + K   A C C
Sbjct: 578 LEFQ-CSDLSSSIDILSKQDEEHEKEKRKLKDTGVSTSAEELKTFRAMCKC 627


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/80 (18%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -3

Query: 665 NMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKPTEDNFE 486
           N+E+   + +        S+  +GC  E +  ++ + +++A+ H ++   +    E+ F 
Sbjct: 56  NIEEDYAKRMAKLSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQISQLLQDDVENAFT 115

Query: 485 NSAS--RDKMEQLVKSLEQL 432
             A+  +DK + +V  +E++
Sbjct: 116 RYAASLKDKKKMIVSGIEKV 135


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 281 YHLENVPIQLPIILYCLALQN 219
           + LE V +Q P+ + CLA++N
Sbjct: 39  FSLEKVQLQFPVSIRCLAVEN 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,730
Number of Sequences: 5004
Number of extensions: 59470
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)