Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_F17
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987...    29   2.6  
06_02_0097 + 11710560-11710859,11712605-11713270                       29   2.6  
05_05_0298 - 23926266-23926442,23926573-23926632,23926822-239270...    28   6.1  
05_07_0350 - 29457444-29457871,29458786-29461456                       28   8.1  
04_04_0967 + 29782460-29783725                                         28   8.1  

>09_04_0260 -
           16197522-16197669,16198027-16198130,16198508-16198719,
           16198795-16198900,16199006-16199119,16199200-16199417,
           16199837-16199900,16199982-16200335,16200609-16200767,
           16201486-16202907
          Length = 966

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 608 AFGSGCSMEQMI---NIRDQQEHLARLHFRLCADVDKPT-EDNFEN 483
           +F S C ++  +   NI D  E L  +H   C D DKP  E N +N
Sbjct: 435 SFNSSCEVQCPLCGSNISDLSEELRLVHTNSCLDGDKPAKEPNSDN 480


>06_02_0097 + 11710560-11710859,11712605-11713270
          Length = 321

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 427 FDNCSKLLTSCSILSLDAEFSKLSSVGLSTSAHKRKCNLAKCSC 558
           F   SKL   C I S DA+F++  ++     + K  C+ AK  C
Sbjct: 109 FSCWSKLSNKCHICSRDAKFARNIALEKIVESIKSSCSYAKWGC 152


>05_05_0298 -
           23926266-23926442,23926573-23926632,23926822-23927029,
           23927471-23927703,23928806-23928860,23928943-23929649
          Length = 479

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 542 RLHF-RLCADVDKPTEDNFENSASRDKMEQLV 450
           RLHF R+CAD +  T   FE      KM+ L+
Sbjct: 326 RLHFGRICADGENATLSEFEQVLRAMKMDSLI 357


>05_07_0350 - 29457444-29457871,29458786-29461456
          Length = 1032

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 488  ENSASRDKMEQLVKSLEQLSNSIERLHCDTNPCSST 381
            E+S  R  M ++V+ LEQ    + R H    P +ST
Sbjct: 989  EHSVERPTMREVVQMLEQAKQQLSRCHPPPPPPTST 1024


>04_04_0967 + 29782460-29783725
          Length = 421

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -3

Query: 674 DVKNMEKALLELLDDFHTGKLSA 606
           DV +M KALLELL D  + KLS+
Sbjct: 236 DVDDMVKALLELLSDGASAKLSS 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,505
Number of Sequences: 37544
Number of extensions: 305253
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)