Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_F17
(694 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC108717-1|AAI08718.1| 274|Homo sapiens coiled-coil domain cont... 91 5e-18
BC080566-1|AAH80566.1| 237|Homo sapiens CCDC28A protein protein. 91 5e-18
BC013019-1|AAH13019.1| 130|Homo sapiens CCDC28A protein protein. 91 5e-18
BC004464-1|AAH04464.1| 162|Homo sapiens CCDC28A protein protein. 91 5e-18
AY167571-1|AAN87344.1| 274|Homo sapiens chemokine C-C motif rec... 91 5e-18
AL121834-1|CAI42866.1| 274|Homo sapiens coiled-coil domain cont... 91 5e-18
BC022848-1|AAH22848.1| 200|Homo sapiens coiled-coil domain cont... 83 7e-16
AL049795-5|CAB75616.1| 200|Homo sapiens coiled-coil domain cont... 83 7e-16
BC002462-1|AAH02462.1| 241|Homo sapiens CCDC28B protein protein. 76 1e-13
AL049795-4|CAI22057.1| 241|Homo sapiens coiled-coil domain cont... 76 1e-13
L04510-1|AAA35940.1| 574|Homo sapiens nucleotide binding protei... 31 3.9
BC022510-1|AAH22510.1| 574|Homo sapiens tripartite motif-contai... 31 3.9
AF230399-1|AAG50178.1| 546|Homo sapiens tripartite motif protei... 31 3.9
AF230398-1|AAG50177.1| 569|Homo sapiens tripartite motif protei... 31 3.9
AF230397-1|AAG50176.1| 574|Homo sapiens tripartite motif protei... 31 3.9
>BC108717-1|AAI08718.1| 274|Homo sapiens coiled-coil domain
containing 28A protein.
Length = 274
Score = 90.6 bits (215), Expect = 5e-18
Identities = 42/92 (45%), Positives = 66/92 (71%)
Frame = -3
Query: 683 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKP 504
+ DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++
Sbjct: 171 DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEEL 230
Query: 503 TEDNFENSASRDKMEQLVKSLEQLSNSIERLH 408
ED +AS +++L+ LE+L++SI++LH
Sbjct: 231 PEDK-RKTASDSNLDRLLSDLEELNSSIQKLH 261
>BC080566-1|AAH80566.1| 237|Homo sapiens CCDC28A protein protein.
Length = 237
Score = 90.6 bits (215), Expect = 5e-18
Identities = 42/92 (45%), Positives = 66/92 (71%)
Frame = -3
Query: 683 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKP 504
+ DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++
Sbjct: 134 DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEEL 193
Query: 503 TEDNFENSASRDKMEQLVKSLEQLSNSIERLH 408
ED +AS +++L+ LE+L++SI++LH
Sbjct: 194 PEDK-RKTASDSNLDRLLSDLEELNSSIQKLH 224
>BC013019-1|AAH13019.1| 130|Homo sapiens CCDC28A protein protein.
Length = 130
Score = 90.6 bits (215), Expect = 5e-18
Identities = 42/92 (45%), Positives = 66/92 (71%)
Frame = -3
Query: 683 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKP 504
+ DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++
Sbjct: 27 DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEEL 86
Query: 503 TEDNFENSASRDKMEQLVKSLEQLSNSIERLH 408
ED +AS +++L+ LE+L++SI++LH
Sbjct: 87 PEDK-RKTASDSNLDRLLSDLEELNSSIQKLH 117
>BC004464-1|AAH04464.1| 162|Homo sapiens CCDC28A protein protein.
Length = 162
Score = 90.6 bits (215), Expect = 5e-18
Identities = 42/92 (45%), Positives = 66/92 (71%)
Frame = -3
Query: 683 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKP 504
+ DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++
Sbjct: 59 DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEEL 118
Query: 503 TEDNFENSASRDKMEQLVKSLEQLSNSIERLH 408
ED +AS +++L+ LE+L++SI++LH
Sbjct: 119 PEDK-RKTASDSNLDRLLSDLEELNSSIQKLH 149
>AY167571-1|AAN87344.1| 274|Homo sapiens chemokine C-C motif
receptor-like 1 adjacent protein.
Length = 274
Score = 90.6 bits (215), Expect = 5e-18
Identities = 42/92 (45%), Positives = 66/92 (71%)
Frame = -3
Query: 683 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKP 504
+ DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++
Sbjct: 171 DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEEL 230
Query: 503 TEDNFENSASRDKMEQLVKSLEQLSNSIERLH 408
ED +AS +++L+ LE+L++SI++LH
Sbjct: 231 PEDK-RKTASDSNLDRLLSDLEELNSSIQKLH 261
>AL121834-1|CAI42866.1| 274|Homo sapiens coiled-coil domain
containing 28A protein.
Length = 274
Score = 90.6 bits (215), Expect = 5e-18
Identities = 42/92 (45%), Positives = 66/92 (71%)
Frame = -3
Query: 683 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRLCADVDKP 504
+ DV+ ME+ LL LL+DFH+GKL AFG+ CS+EQM ++R QE LARL+ L ++++
Sbjct: 171 DVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEEL 230
Query: 503 TEDNFENSASRDKMEQLVKSLEQLSNSIERLH 408
ED +AS +++L+ LE+L++SI++LH
Sbjct: 231 PEDK-RKTASDSNLDRLLSDLEELNSSIQKLH 261
>BC022848-1|AAH22848.1| 200|Homo sapiens coiled-coil domain
containing 28B protein.
Length = 200
Score = 83.4 bits (197), Expect = 7e-16
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 12/108 (11%)
Frame = -3
Query: 683 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL--CADV- 513
E DV ME LL LL+DFH+G+L AFG CS EQ+ ++R+ QE LARLHF L C +
Sbjct: 84 EVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEE 143
Query: 512 -DKPTEDNFENSASRDK--------MEQLVKSLEQLSNSIERLHCDTN 396
D+ ED ++ ++QL+ +LE LSNSI++LH N
Sbjct: 144 DDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
>AL049795-5|CAB75616.1| 200|Homo sapiens coiled-coil domain
containing 28B protein.
Length = 200
Score = 83.4 bits (197), Expect = 7e-16
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 12/108 (11%)
Frame = -3
Query: 683 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL--CADV- 513
E DV ME LL LL+DFH+G+L AFG CS EQ+ ++R+ QE LARLHF L C +
Sbjct: 84 EVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEE 143
Query: 512 -DKPTEDNFENSASRDK--------MEQLVKSLEQLSNSIERLHCDTN 396
D+ ED ++ ++QL+ +LE LSNSI++LH N
Sbjct: 144 DDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
>BC002462-1|AAH02462.1| 241|Homo sapiens CCDC28B protein protein.
Length = 241
Score = 75.8 bits (178), Expect = 1e-13
Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Frame = -3
Query: 683 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL--CADV- 513
E DV ME LL LL+DFH+G+L AFG CS EQ+ ++R+ QE LARLHF L C +
Sbjct: 84 EVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEE 143
Query: 512 -DKPTEDNF-ENSASRDKMEQLVKSLEQLSNSIERLHCDTNPCSST 381
D+ ED E K ++L+QL +++E L P T
Sbjct: 144 DDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSMYPFQGT 189
>AL049795-4|CAI22057.1| 241|Homo sapiens coiled-coil domain
containing 28B protein.
Length = 241
Score = 75.8 bits (178), Expect = 1e-13
Identities = 44/106 (41%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Frame = -3
Query: 683 ETPDVKNMEKALLELLDDFHTGKLSAFGSGCSMEQMINIRDQQEHLARLHFRL--CADV- 513
E DV ME LL LL+DFH+G+L AFG CS EQ+ ++R+ QE LARLHF L C +
Sbjct: 84 EVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEE 143
Query: 512 -DKPTEDNF-ENSASRDKMEQLVKSLEQLSNSIERLHCDTNPCSST 381
D+ ED E K ++L+QL +++E L P T
Sbjct: 144 DDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSMYPFQGT 189
>L04510-1|AAA35940.1| 574|Homo sapiens nucleotide binding protein
protein.
Length = 574
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -3
Query: 653 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 519
ALLELL+ G + +G+ G S E +I + + HLA ++ +CA
Sbjct: 94 ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143
>BC022510-1|AAH22510.1| 574|Homo sapiens tripartite
motif-containing 23 protein.
Length = 574
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -3
Query: 653 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 519
ALLELL+ G + +G+ G S E +I + + HLA ++ +CA
Sbjct: 94 ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143
>AF230399-1|AAG50178.1| 546|Homo sapiens tripartite motif protein
TRIM23 gamma protein.
Length = 546
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -3
Query: 653 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 519
ALLELL+ G + +G+ G S E +I + + HLA ++ +CA
Sbjct: 94 ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143
>AF230398-1|AAG50177.1| 569|Homo sapiens tripartite motif protein
TRIM23 beta protein.
Length = 569
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -3
Query: 653 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 519
ALLELL+ G + +G+ G S E +I + + HLA ++ +CA
Sbjct: 94 ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143
>AF230397-1|AAG50176.1| 574|Homo sapiens tripartite motif protein
TRIM23 alpha protein.
Length = 574
Score = 31.1 bits (67), Expect = 3.9
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -3
Query: 653 ALLELLDDFHTGKLSAFGS-----GCSMEQMINIRDQQEHLARLHFRLCA 519
ALLELL+ G + +G+ G S E +I + + HLA ++ +CA
Sbjct: 94 ALLELLERLQNGPIGQYGAAEESIGISGESIIRCDEDEAHLASVYCTVCA 143
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,877,643
Number of Sequences: 237096
Number of extensions: 1848213
Number of successful extensions: 3601
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3594
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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