Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_F16
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.67 
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    29   0.67 
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    28   1.5  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    27   2.7  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    26   6.2  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   8.2  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   8.2  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
 Frame = +1

Query: 178 TLLATTSYILLVLV-SSGRLCSTRIGVLCFTTILASSPASVFLYSFILWMSSSVTATGVF 354
           T +  +SY+  V   +S R+ +T +  +  +T +    ASV   S  +  SSSV      
Sbjct: 425 TSIIVSSYVSTVTQPASTRVQTTTVSSI--STSVKQPTASVASSSVSVPSSSSVQPQSST 482

Query: 355 PFRIFGSAFSLPSFMHRAS*VLHFVSSPFLSSDNSFLETCISF*T---ITWPPFEI-SSQ 522
           P     SA S  S +  +S V+  VSS  LS  ++   T  S  +   I+ P   + SS 
Sbjct: 483 PISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSS 542

Query: 523 TLFSSSPVRSLLGSVISIAKGLPS 594
           +   +S       S+ +I+ G+ S
Sbjct: 543 SSIPTSSSSDFSSSITTISSGISS 566


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 524 VCEEISKGGQVIVQKLMHVSRNELSELKKGEETKCKTYEAL 402
           +C     G  + +QKL+H+     S+  K  ET  +T+ AL
Sbjct: 596 ICSYAGTGNVLHIQKLLHICSEPPSDDAKESETTIQTFAAL 636


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
 Frame = -3

Query: 614 WNVRCXGDGRPFAIEITDPRRDLTGDELKRVCEE--ISKGGQVIVQKLMHVSRNELSELK 441
           WN R    G+P ++ ++  RR   G   K + ++  ++    +    L H+     S L+
Sbjct: 181 WNQRSLSSGKPPSLHLSGNRRLSMGSPTKSIYDQNGLTTPRPIGSDDLTHMYDPYTSPLR 240

Query: 440 KGEETKCK-TYEALCIKLGNENAEPNILNGKTPVAVTEEDIQRIN 309
               T  + +   L ++ G      ++L  KTP  +  + + + N
Sbjct: 241 TPSRTLSRSSSHYLWVRHGKLTRSVSLLQHKTPRRIRPKSLSKSN 285


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 398 IKLGNENAEPNILNGKTPVAVTEEDIQRINEYRN-TEAGD 282
           +++ NEN    +LNGK  + V  +D +R  +YR+ TE  D
Sbjct: 538 LQIFNENELDTLLNGKRDIDV--QDWKRFTDYRSYTETDD 575


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 367 FGSAFSLPSFMHRAS*VLHFVSSPFLSSDNSFLETCISF*TITWPPFEISSQTLFS 534
           F  +F L + ++ AS  L F+S P  +   +     I++  + W    +++ TLFS
Sbjct: 81  FPISFLLVAMIYTASKALQFLSVPVYTIFKNLTIIIIAYGEVLWFGGHVTALTLFS 136


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 668 VKSNTFAMGSNMISWTD 718
           +  N   MGSN +SWT+
Sbjct: 248 INDNPLTMGSNTVSWTE 264


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 473 HVSRNELSELKKGEETKCKTYEALCIKLGNENAEPN 366
           H    EL+ +KK   T+ +TY +  IK+ +    P+
Sbjct: 158 HGKEKELAHIKKTVATRARTYSSNSIKICDVEVGPS 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,330
Number of Sequences: 5004
Number of extensions: 60586
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)